Conserved Protein Domain Family
LEF-8

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pfam04941: LEF-8 
Late expression factor 8 (LEF-8)
Late expression factor 8 (LEF-8) is one of the primary components of RNA polymerase produced by polyhedrosis viruses. LEF-8 shows homology to the second largest subunit of prokaryotic DNA-directed RNA polymerase.
Statistics
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PSSM-Id: 282757
Aligned: 3 rows
Threshold Bit Score: 1054.13
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8B9K0   5 VQDFNELYDRIENKYKLkYIFDC-ATNNNEPMLFCAIQERKSYLCCALNEQL-SCVMHKCVPVIFGTRLDKQFRKPDNVD 82  Rachiplusia ou MNPV
Q6JP89   3 VKDFNFLYQKLCNRNEI-YVLNCkHKRKNVPNIDQLINQKKSYVCCLYNEVLqQCILHQCVVVALQSWLDRKFRDITTID 81  Neodiprion lecontei n...
Q91ES4   4 ITDFNNLYTHLAHTYNLdYQLSC-HHHNNTPL---AMANIKTYFCCAVSVPLkKCVLHNCVVVIVGTWLDKRFRGD---E 76  Cydia pomonella granu...
Q8B9K0  83 ANNNING-TFMLDGRFLSFPNIMMNNNVLVHNFYDKLYAKH--CKRMFLYGNVDQEKHINR---AIQLVYDKQDDVLFAR 156 Rachiplusia ou MNPV
Q6JP89  82 EDEQVLGcCFVMNGHYYTIPNIMMNNNIQLHNFRSAQFSSD--AKRLYLYGNFCPDGDVKRygqSIQLVYESSTDELHVR 159 Neodiprion lecontei n...
Q91ES4  77 CNYGFEG-TFILDGRHFSFPNIMMNNNVLIHNFFDKQYARDkkMKRMFLYGNYDDDKTVNR---AIQLVYDKVDDVLYVR 152 Cydia pomonella granu...
Q8B9K0 157 DVYASDYVVTEDLNSILETYLANSGKWKPLDFLFEYNTLhkqqlvEHIKIIMNH-DINYSIDSLANKIVYKHAYLIElll 235 Rachiplusia ou MNPV
Q6JP89 160 DVYGQDYFVDDKIIEKIVPYFQNNYKWPELGFLFDNIDS------DLIKSTMRHiCTDYHIDTLSNKLILSPSQLLE--- 230 Neodiprion lecontei n...
Q91ES4 153 DVYAKDYIVDSGINQILREYLKCSGKWPDMDFVFSFDDYte--lfDTLKSIMSV-DIPYQIDSLSNKIIYKHSYLIHlt- 228 Cydia pomonella granu...
Q8B9K0 236 tstilqnyqRVLDKTADDDAYTVVNKRRKiqSVLYNKESKKIVDCIVNGRLIYCVSKTFSKQR--KVFPNQQDNSSNNNI 313 Rachiplusia ou MNPV
Q6JP89 231 ---------TFLLQTKKFILYLIDKQIPV--TKLVNDSSRGVMQSIVDGQIFKGISKTLSTQKifKMNPRLQEHTSRTNR 299 Neodiprion lecontei n...
Q91ES4 229 -------ysTVLNKLRNLTVTDADNTKKK--CVLFATESKKINDTIVMGKLIQSVSKTLSKQKkyD-----QEYNSNNN- 293 Cydia pomonella granu...
Q8B9K0 314 EISLPVLKYRVGNEVARITNDSMRQKMLKQKKDFVKFIGSFFHGEMTVAGKKFFLCRNACLPNVDYEMVAQKFKYLLKHN 393 Rachiplusia ou MNPV
Q6JP89 300 DVNVFDLNFKNIDEILKIVSKDVSYKANMQYSDYRYFIDHCDHGELHAAGKTFTKTHDVILPNIDYSTIFRIFTTLINDQ 379 Neodiprion lecontei n...
Q91ES4 294 NLEIFPLRHRIGNEVLRVINENLQQDMLKHTADYIKFVDSFFHGEMTVAGKKFFLCHNVVLPDVDYKRVSLLFRELIHKN 373 Cydia pomonella granu...
Q8B9K0 394 LVafvd-------------------------dlnDVQDDSLLIAFNDRPTNLKClkSNTSFIVYTMKRnlAPIELKITDR 448 Rachiplusia ou MNPV
Q6JP89 380 LI--------------------------------STSNSKYRIVFNSCPTQYFV--HNVEKFVKIIKA--LPIEIRMFKS 423 Neodiprion lecontei n...
Q91ES4 374 VLytkkvggedeseltgekvkilnfskkspnkvgLVSNSELVVAFNNRPTKYYCnrDSLYQIYYTMKRgyAPVEIKLTNN 453 Cydia pomonella granu...
Q8B9K0 449 ILYVNHHEGMICIKKKLRVNNEaNINVLLTPYEYHYKHSIYYNPIiqcaIVENDDV-------------KSLMSKLEQYY 515 Rachiplusia ou MNPV
Q6JP89 424 LICLNYHVGLIMKKARLFVDDG-YIDTYVTPFELHHESSCFKDKI----FLNESCV-------------RSLLSRTTLFY 485 Neodiprion lecontei n...
Q91ES4 454 ILFVNHHEGMVMLKRVVYIDNEiHIKTLQTAYEYHNEHS----------LLNSEDVllrcdetgpmnttASLMSTMVLEY 523 Cydia pomonella granu...
Q8B9K0 516 YRNFIHLFHTTPVPKLIVSLTNLKNAMPVF---EYKKENCVTGL--PNGYSVAVNKSVLLNNKMFKLWTLVRDNKLMTAE 590 Rachiplusia ou MNPV
Q6JP89 486 CNKHTDVFINIPPAKIMVFMRNLKNASPVFipsSFVPEKYMKFMknENKNCIVVDSKHYCNDKMIYLWTMIGDDRLKTSE 565 Neodiprion lecontei n...
Q91ES4 524 YKNYLHIFNTIPVAKLIVSLTNLKNGMVV-------QKKGFKSL--PVGNSVVVEDSVYCNDRMFCLWTVVMDSRLKTAE 594 Cydia pomonella granu...
Q8B9K0 591 DPYIPHIALPICLYNNKVNKLKGklVVGTKQSCLVKFTNSSDKNYVALDDGLVLYMAGVLVTNAKINWVYDGRRYKIETC 670 Rachiplusia ou MNPV
Q6JP89 566 DPYVPNXNQPFVVYNLRSIILRG--ISTLNENEYFRITSNVENNVLNTLYGYKLIGVCQITSQNAINWNTLGKKIKITSL 643 Neodiprion lecontei n...
Q91ES4 595 DPYVPHARLPIKIYHNKINRIKGk-VSGDNNE--FVYEKSGANNIIEVEGGNCLCMFGTLLCNNKINWNHDGKKYKIEFC 671 Cydia pomonella granu...
Q8B9K0 671 TNGNFNVYKVYVYFRQ---IKNQKI----EKLDASMVvngd-nvmLKIVIVTSTNDLEGIKICGIHGQKGVFNRSEDLTE 742 Rachiplusia ou MNPV
Q6JP89 644 RSKNMYIYKIMMYFHNnfdIRSLKVkcefEKINKEYI--------VKIRHVFEYKDCVGIKICSVHGQKGVLNIASDLNC 715 Neodiprion lecontei n...
Q91ES4 672 TSKQWCVYKFYMYFRK---VGGQVV----ERVDSEMTtdesgsvfVKLEMVYSVSDLEGLKICGVHGQKGVLHQAEDLSR 744 Cydia pomonella granu...
Q8B9K0 743 WMAEDG 748 Rachiplusia ou MNPV
Q6JP89 716 WISEDG 721 Neodiprion lecontei nucleopolyhedrovirus
Q91ES4 745 FVAEDD 750 Cydia pomonella granulovirus
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