7LBM,6XP5


Conserved Protein Domain Family
Med6

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pfam04934: Med6 (This model is not part of the current CDD release)
MED6 mediator sub complex component
Component of RNA polymerase II holoenzyme and mediator sub complex.
Statistics
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PSSM-Id: 516519
Aligned: 112 rows
Threshold Bit Score: 72.9525
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7LBM_g        13 ISWVDSSWIP--IL-NSGSVLDYFS--ErsNPFYDRTCN---NEVVKMQRL----TLEH--LNQM-VGIEYILL------ 71  human
XP_001581746  12 MAYRNDDFLQmnLLtIGNLFNSYFN--N--SPFYDPTCL---NEQVNRYEKftdiFDE--------NGITYRLTy----- 71 
XP_001307085   3 gaFINKEFIQqeGLtLENIIHPYFE--S--SPYYKPERG---------------------------SKLEISFAqphgsa 51 
XP_003139298  23 qSFKNPNWPPn-fI-TPDNVLDYFCdpG--NVFYDVSSC---NQHIRMQNLnrplHDC---LQSM-QGIQYTVV------ 85 
Q9N337        19 VSFRNPQWPPn-fI-NKDNVLDYFCnqA--NAFYEMNSC---NQQIRMQNIvnrtVEEC--LRTM-PGIQYVLW------ 82  Caenorhabditis ...
XP_002683214  34 kTWRDELFLRfrPIvNEDTALEYFCnrS--NPFYSKKSV---NETLRMQQTggiiDRNAl-LEST-EGIRYSVDs----- 101
Q4MZP1        26 IEFIDPQYLSqvTLdNENSALEYFY--L--SPFYLKHRNkalNELIRSGLP----------VDDYqVGLIFKVTynnlpd 91  Theileria parva
Q8IKE0        17 IEYVDNIFLSkyMLnNIENAMQYFY--T--CPFYTSRSKlclNEKIRTGKI----------INDDdEGYIFNITydnl-- 80  Plasmodium falc...
Q7RNW7        16 IEYVDNIFLSknILnNRENALNYFY--T--SPFYTSKSHislNEKIRVGKI----------IGEEdEGYLFDISydnl-- 79  Plasmodium yoel...
XP_006681567   9 MSFKDTAFLQllGL-NEHNALDYFS--M--SQFYDKSCL---NEQLKMQVRhnelQAQQldGRQM-KGLEYTLWy----- 74  Batrachochytriu...
7LBM_g        72 -----------HAQEP-----------------------------------ILFIIRKQQ-RQSPA---QVIPLADYYII 101 human
XP_001581746  72 ----------vQIQEPnflktldpanppkelileteqeiyapekanypittGLCVISKYRtRLQDHgepIKELLAQYYMI 141
XP_001307085  52 ------vlsaaHLSKPehksv--------------------------svdqGLVVIDEVL---------NNEIIAKYIVK 90 
XP_003139298  86 -----------GTFPP------------------------------------LYVIMKQR-RNSPT---NVTPLAYYYIV 114
Q9N337        83 -----------YSQPP------------------------------------LFIICKQR-RNNVT---NVSPIAYYYVI 111 Caenorhabditis ...
XP_002683214 102 ----------kRSKPP-----------------------------------SLFIIKKEKvEKKDRn--APKLLNLYYIA 134
Q4MZP1        92 lyeeslkfganSANKSqfy-----------------------------imsSVFHITLYS-RDLGHnsiENTPINVYYII 141 Theileria parva
Q8IKE0        81 --------nilKENEPsdfvskh----------------------iyyntnSIFHVSLRQ-KYRLNnvnCTKVIQYFCIV 129 Plasmodium falc...
Q7RNW7        80 --------dvlKKDEPtdsasvh----------------------iyyntnSIYHIRLTH-IYKLKnilFKKVTQMFCVF 128 Plasmodium yoel...
XP_006681567  75 -----------FTPQP-----------------------------------SLYVIRKQT-RLSPT---RVDLVAVYYIV 104 Batrachochytriu...
7LBM_g       102 A--GVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYH 140 human
XP_001581746 142 D--ATIYQAPDLYSLVTSNFRTAIFNLREAIRDADSAYKWT 180
XP_001307085  91 D--GYILPAPTFYNLIAGRVCSSLNSLQKSIKNVHKVFNWN 129
XP_003139298 115 N--GTVYQCPDIYTYIQSKLISIVDPLRQALEQARNFNRFN 153
Q9N337       112 N--GSVHQAPDMYSLVQSRLLGALEPLRNAFGEVTNYSRYN 150 Caenorhabditis elegans
XP_002683214 135 AeaGVVYQSPSVYDVIQARSFNSLSLLNQTFKEIQPHVEYT 175
Q4MZP1       142 Q--GSIFMCPPFGTLIRTKLHQYIAQFERFYDRINGIMKWS 180 Theileria parva
Q8IKE0       130 N--GKIYSTLSFGELLTNKINNIVRNINNLFDSVNNMTNFN 168 Plasmodium falciparum 3D7
Q7RNW7       129 N--GKIYSSRSFGELLINKINNIVRNIENFYDRVNNMMNFN 167 Plasmodium yoelii yoelii
XP_006681567 105 E--GTIYQSPTLCQVLANRVRTSLYFTKDALHVARESYRYN 143 Batrachochytrium dendrobatidis JAM81
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