8C6J


Conserved Protein Domain Family
XAP5

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pfam04921: XAP5 (This model is not part of the current CDD release)
XAP5, circadian clock regulator C-terminal domain
This protein is found in a wide range of eukaryotes. It is a nuclear protein previously suggested to be DNA binding but recent studies suggest that they play a role in the spliceosome complex. In plants, this family is essential for correct circadian clock functioning by acting as a light-quality regulator coordinating the activities of blue and red light signalling pathways during plant growth - inhibiting growth in red light but promoting growth in blue light. The AlphaFold model of this domain shows structural similarity to the RA domain pfam00788.
Statistics
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PSSM-Id: 516509
Aligned: 56 rows
Threshold Bit Score: 213.204
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8C6J_CF      197 EEIEITFSYWDGSGHrrtVKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKS 276 human
XP_002997942 192 EDVAVTYSYWDGSGHrreITIPKKTTIGKYLELVKQQLMTEFAELRGVSAENLIYIKEDLIIPHHYSFYDLIVTKARGKS 271
XP_020434560 207 EVVEITYSYWDGSGHrrvLQCTKGTTIDKFLEMA----RQEFKELRGVSVDHLLFIKEDLIIPHNYSFYDLIIEKARGKS 282
Q54S94       213 EEFEITYSFWDGSGHrrsMKCSKGTTIERFLENA----RKEFKELRGVSVDKLMFIKEDIIIPHNYSFYDLMLSKARGKS 288 Dictyostelium d...
XP_003290247 104 EEIEITYSYWDGSGHrrsLKCTKGTTIEKFLEAA----RKEFKELRGVTVDHLMFIKEDIIIPHDYSFYDLIISKARGKS 179
XP_003054967 184 EKLEITFSYWDGGGHrrkIEVLKGDTIGIFLGKARELLSKEFRELRHESTDGLMYIKEDLILPHTATFYDFIVNKVRGKS 263
XP_005846398 216 EPLEIIYSYYNGTGHrraVTVRKGDNVGQFLKAVVEQLTPQFREIRTTSVGNLMYVKEDIILPHTVTFYDLIVNKAMGKS 295
XP_020883928 193 EPLEITYSYWDGTGHrrvIQVRKGDPIGNFLRAVQQQLAPDFREIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKS 272
XP_002291177 229 EVLEITYSYWDGTGHrrtVHCKKGDTVAQFLELVRKDLAKEFREMCNVSSDALLYVKEDLIIPQDISFYDLIATRARGKS 308
XP_001613655 251 KTIEITYSYYDGSGHrrkISVKQKTTIGQFINKCVDNLKNEFIHLRSASCETLMFVKEDIILPNYLTFYELIKNKAQGKT 330 malaria parasit...
8C6J_CF      277 GPLFnfDVHDDVRLLS-DATVEKDESHAGKVVLRSWYEKNKHIFPASRWEP-----YDPEKK 332 human
XP_002997942 272 GPLFhfDVHDDVRLLQ-DRRVEKDESHPGKVVDRYWYEKNKHIFPASRWEV-----YDPNVV 327
XP_020434560 283 GPLFkfDVHDDVRLVS-DATVEKDETHAGKVVEKSWYEKNKHIFPASRWEV-----YDPTVA 338
Q54S94       289 GPLFrfDVHEDVRLVN-DATVEKEESHAAKMVESSWYERNKHIFPSSRWEYlaedgFDTQDT 349 Dictyostelium discoideum
XP_003290247 180 GPLFkfDVHEDVRVMN-DASVEKDESHAAKMVEKGWYERNRHIFPASRWCV-----YEPGME 235
XP_003054967 264 GPLFhfGVHDDVRLKG-GANIEKEDSHAGKIIHRTWYDKNKHIFPASRWEQ-----YDPLRP 319
XP_005846398 296 GPLFqfDLHEHAVASF-DPRVKSQDSHAGKVVDRHWYNKNKHIYPASRWAP-----FDDARQ 351
XP_020883928 273 GPLFhfDVHEDVRTIA-DATIEKDESHAGKVVERHWYEKNKHIFPASRWEI-----YDPTKK 328
XP_002291177 309 GPLFnfDVHDDVRLGAlDARVEKDESHPGKVVERRWYDRNKHIFPASRWEP-----YDPAKE 365
XP_001613655 331 GPLFafDAVENLSGVT-DIRREKTDTHAGKLVEKKWYERNKHIFPASKWEI-----YKPMKT 386 malaria parasite P. vivax
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