Conserved Protein Domain Family
Nab1

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pfam04902: Nab1 (This model is not part of the current CDD release)
Conserved region in Nab1
Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This C-terminal region is found only in the Nab1 subfamily.
Statistics
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PSSM-Id: 516498
Aligned: 10 rows
Threshold Bit Score: 233.224
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q1LWI4       310 VDEDEPSPKRIKSE-DGVYDLQEALQVLHSRQETVREQLAVAKSKGEETIRHSLQvqLDSLLAKQVELLRDAAVQERLKS 388 zebrafish
3_pfamImport   1 GDRDEASPKRIKTE-ENFFDIQEALQAIHMRQEMLREQLACAKSKGEETVGRNLQ--LERLLARQMEILQDAAVQERLQA 77 
6_pfamImport   1 GERDEPSPKRIKTE-ENFFDIQEALQAIHMRQEMLREQLAFAKSKGEETVGRNLQmqLERLLARQMEILQDAAVQERLQA 79 
NP_005957    322 GERDELSPKRIKVE-DGFPDFQDSVQTLFQ-Q---------ARAKSEELAALSSQq-PEKVMAKQMEFLCNQAGYERLQH 389
XP_003217466 396 GERDELSPKRIKIE-DGFPDFQDAVQSFYH-QDSVKIQQALSRGKCEDLTALGSQ--PEKMMAKQMEFLCTQAGLER--- 468
1_pfamImport   1 GDRDEPSPKRIKTEqEGFFDLQEALQAIHMRQETLREQLAQARSKGEETVSRNIQvqLERLLAKQMEILHDAAAQDRLQA 80 
XP_005167953 317 GDRDEPSPKRIKTE-EGCFDLQEALQAIHMRQETLKEQLAHARSKGEETLGRNIQvqLERLLAKQMEILHDAAAQDRLQA 395 zebrafish
NP_989599    322 GERDELSPKRVKIE-DGYPDFQDAVQTLYQ-PD--KMPLALAKGKSEDSAALNAQ--SEKVMAKQMEFLCNQAGLER--- 392 chicken
XP_005996609 322 GERDEPSPKRIKTE-DGFPDFQEALQILQQKQEALKEQLVLAKSKGeditvhsiqvqLERLLAKQMELLRCPAGQDRLQL 400 coelacanth
XP_011604580 316 GDRDEPSPKRIKTE-ENFFDIQEALQAIHMRQEMLREQLACAKSKGEETVGRNLQmqLERLLARQMEILQDAAVQERLQA 394 torafugu
Q1LWI4       389 LDWRIPTAALKYLTpTAQHCNSglSHLSS-----ERPLNLRLS--------------DVPLGRQLANELKR--------- 440 zebrafish
3_pfamImport  78 LDWRIPPAALKYLN-EAQGTNG--AAEAGrdhqdERPINLRVVsqsm-------qegDLPLGKQLANELKR--------- 138
6_pfamImport  80 LDWRIPPAALKYLT-DIQNTNGa-AAEAGrdnhdERPINLRVVsqnm-------qegDLPLGKQLANELKR--------- 141
NP_005957    390 AERRLSAGLYRQSS-EEHSPNGl-TSDNSdg-qgERPLNLRMPnlqnrqphhfvvdgE----------LSR--------- 447
XP_003217466 469 ---RLSTGLYRQNS-EEHSPNGl-ALDHVdg-qgERPLNLRMSglpnrhlphisldgEPHVVKPLCSELSR--------- 533
1_pfamImport  81 LEWRVPPGAFKHSA-ERQSTNGv-TSDKSsdqhgEKPLNLHVTrqrag-----asegETPLGKQLANELKR--------- 144
XP_005167953 396 LEWRVPPGPYKHSA-DRQNSNGl-TADKNtepqgERPLNLRVTnqrts-----isdgDTPLGKQLANELKR--------- 459 zebrafish
NP_989599    393 ---RLSTGCYRQNS-EEHSPNGm-SLDNVdg-qgERPLNLRMSnlpnrqlqhisldgEQHIGKPLCSELIR--------- 457 chicken
XP_005996609 401 SERRLSTGLSKQNS-EEQNTSGl-MTESTda-daEKPLNLRISnhqsrqlqqvvaerEHLFGKQQSTELSR--------- 468 coelacanth
XP_011604580 395 LDWRIPPAALKYLT-DIQNTNGtaA-EASrdnhdERPINLRVVsqnm-------qegDLPLGKQLANELKRhhshnnsnn 465 torafugu
Q1LWI4       441 --HHKHnteerhhnqhnsEERVTAATENG--------SQKELLDKKKIKSEPEDS 485 zebrafish
3_pfamImport 139 --HHQA------------DDTKTPATENGts-----qRASVSTERKNIKSEPGDA 174
6_pfamImport 142 --HHNHnh---------sNSSSSANSKNGtt-----pRTTSTTEKKTIKSEPEDS 180
NP_005957    448 --LYP-------------SEAKSHSSESLgilkdyphSAFT-LEKKVIKTEPEDS 486
XP_003217466 534 --LYAS------------GEAKSQSSEGLgimkdfphSAFSNLERKVIKTEPEDT 574
1_pfamImport 145 --HHQAs----------tESKAAAATENGs-------GALNLSEKKTIKSEPEDS 180
XP_005167953 460 --HHHAn----------aENKMSAATENGgda---ssRALNLSEKKTIKSEPEDS 499 zebrafish
NP_989599    458 --LYPG------------GEAKSQSSEGLgilkdfphSAFNNIERKVIKTEPEDT 498 chicken
XP_005996609 469 --FYYG------------SEGKHQYSENLgmlkdfcqTVLSSTERKVIKTEPEDT 509 coelacanth
XP_011604580 466 nnNSNHhhhh----hhhtDESKTPATENGtt-----qRTSSNTEKKTIKSEPEDS 511 torafugu
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