8YF5,4FLB,2KM4


Conserved Protein Domain Family
CID

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pfam04818: CID (This model is not part of the current CDD release)
CID domain
This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase II. This domain is known as the CTD-interacting domain (CID).
Statistics
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PSSM-Id: 516451
Aligned: 192 rows
Threshold Bit Score: 54.1347
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8YF5_E         6 DIVLEKLASLeeTQISIQSIGQWCLFHh----rHAPETVAIWSEFV-----GStqtK-----KLAGLYLANEIIQQS-Ra 70  Komagataella ph...
EJW01266       5 EFLIHNLQTLinTQESIKSVSYYIRLNs----qNYLIILEIFKIEFs---------KsnayhKLNLLYLLNEIIKSEkCl 71 
XP_008073168   7 ETFIREVRTLvpTQEKIKTLALYMKTTs----aESTRMVRILDQEYa---------NsnayhKLNIFYLANELIQTIkKn 73 
Q8SWM7         7 EYLLKSLINLlpTEEQMKTVGLFIRTFk----kDYRAIVDGWMFVYg---------KssayhKLNLLYLANEVVQTTrDa 73  Encephalitozoon...
XP_024331962   7 DYFLKLLKELtiADEQIKSLGVYVISFk----eEYDNILEAYSFLYk---------DssihhKLVLLYLANQILQSVkGn 73 
EOB11909       7 DYFLKQLKQLspTEEQIKTLGLYIKTFk----eEYKNIMEAFEYVYn---------SsnshhKLIMLYLANEILQTDkSy 73 
ESS29592     295 DVVLSLEKQA--TSTAIRSGRHWMEVNgggseeAAQSLACALKKKqatlgsFL---H-----KLNVLYLVHDVVQNEfV- 363
XP_010657574 282 NVLNNL--TG--TKESIKGAKIWFMQRs----pFAPALAEALRDRVfavddSE---R-----QLHIIYLANDILFDSlQ- 344
XP_009127174 261 SVLANL--NG--TKDSIKSAKIWFMQRs----pFAPALAEALRDRVfatddSE---K-----QMHIVYLANDILFDSlQ- 323
XP_040867036 296 NVLNNL--NG--TKESIKGAKLWFMQRs----pFAPALAEALRDRVfaldeVE---R-----QLHIIYLANDILFDSlN- 358 soybean
8YF5_E        71 KRk-----tTFLDEFAKVLPSTLEQIY----PS-MIStHQAKLKRIIDVWSQRKIF-DSNLIHRL 124 Komagataella phaffii
EJW01266      72 DPss----eKLVNEFKQILPSLFLDACksgkVL-ENThVVEKLRELQNFWTKKKLI-KENSINLL 130
XP_008073168  74 EKdl----aLLLEQIKSFVVSNFDDANa---EMsKHPvLKGKLMELKNVWVERRLFeNAELANSP 131
Q8SWM7        74 DPds----iELKIMFKKAVNEVFEETKk---ATmENPsLYKKYCELENVWVQRNVMvMESHGINL 131 Encephalitozoon cuniculi
XP_024331962  74 DDsi----sGLQNGFKKFIIENFFKSKr---EAlPYStICEKFNDLERVWKERGVV-------KL 124
EOB11909      74 DAds----lQLKKELREFIQKTFGKSKa---EAkKHQpLYKKYCDLENVWEERSVI-------NI 124
ESS29592     364 HKkg----svLISAFKPYLVWMLRDAYq--aAA-RDPsSIEKVEKILSLWVKRGII-DEDEQEEM 420
XP_010657574 345 RRinpheldNEALAFKPVLGSMLARIYh--nPQ-NKEeNQSRLQKILQFWASKEVY-DHDTIYGL 405
XP_009127174 324 RRtnlhefdNEALAFRPVLGSMLGKIYh--cPH-NKEaNQSRLENLLQFWASKEVF-DQDTISSL 384
XP_040867036 359 RRtssndldNEALAFKPVLGSMLARIYh--nPQ-SNEeYRKRMQQMVEFWSSKKVY-DQETISLL 419 soybean
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