Conserved Protein Domain Family
protein_MS5

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pfam04776: protein_MS5 
Protein MS5
Proteins are known only from species of Brassicaceae. Protein MS5 is essential for pairing of homologs during early prophase stage of meiosis but not necessary for the initiation of DNA double-strand breaks.
Statistics
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PSSM-Id: 398443
Aligned: 51 rows
Threshold Bit Score: 121.212
Threshold Setting Gi: 297336182
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002893313 219 LPDWPSDDAF-NDGK--RFYLVKESEWQS-TDWISMYLELVITTTDRsiTETRqktevLSQ-------LEIVKVAIETAn 287 Arabidopsis lyr...
RID75204      88 MPDWLPDDYAtST-LllQYYEMKESEVEQaKEWLHLYAELALYTKKQ-----TdpfmfERSk-----pLELGKVVVQTRg 156 field mustard
NP_001119018 133 MPEWMPEDALtGR-DklQYYEMKDSELEEeKEWLHLYAELALFSKLHah-------alESAk-----pFEMKKIVVRTKa 199 thale cress
EFH55540     103 MPNSMPENTS----DnlQYYELSESEVEEyKDWLHLYVDLASRTKWRc----------VHPspvwretFELRKIIVQTRa 168 Arabidopsis lyr...
XP_002875688 182 MPNFVSKEGAvN--DklRFYEVQEQDICA-NDWLRLYTEFALFSFWR-----YnedgfESCl-----pVEIKKIIVETCe 248 Arabidopsis lyr...
XP_002875692 199 MPDFLSETKLd---DklRFYEVQEQDICE-NDWLRLYTEFALFCFWW-----FnedgfKFSl-----pVEMKKIIVETRe 264 Arabidopsis lyr...
XP_002867431 202 LPSWLTEQELsN--KrgQFYELQESDWQG-NEWLHMYAEFALYSKFF-----AygndlRHFl-----pLEMKKIIVQTQe 268 Arabidopsis lyr...
EFH43689     161 MPNWLTKEELaAANDkgQYYELQESDLLG-NEWLHLYAEFALSLNWR--GYAMkntilRRFl-----pLKIKKVIVHTRe 232 Arabidopsis lyr...
Q8LFV1       233 LPEWISDDTLmSCSEqdHFYRVQESDIRE-HNWLQLYTEIASYSLWEgdm------rlKSCv-----pLQIKNVLVRTRe 300 thale cress
XP_009128597 152 LPEWYSDDVLlLSND--QFYQVQDSDVLE-NDWLNLYAEVAMYTLKE-----NdmslfESWl-----pLEIKKVVVQTFe 218 field mustard
XP_002893313 288 EDVEPPNER-LKA-KSAHVYITFKGLAEPraprrvfenGEHVERQAIVRRVMDH-TGYLTL 345 Arabidopsis lyrata subsp. lyrata
RID75204     157 ---VVDSLKeVELlDNAVFFITFKTSCGD-------------VWKGIIRRTRDGiPEHLSL 201 field mustard
NP_001119018 200 ---NVESKKkVKA-ENAIFYTSFRTRCGR-------------DCNCIIRRTTDGkRDHFSL 243 thale cress
EFH55540     169 -D--VESKKkAKA-ENAIFYMNFKCICSQ-------------DCNAIIRRTTDGlPQHMSL 212 Arabidopsis lyrata subsp. lyrata
XP_002875688 249 TH--REPRLkLKS-SNAIFHINFS--------------AKSCDYKSVVRRTTDGkPGHIVL 292 Arabidopsis lyrata subsp. lyrata
XP_002875692 265 TD--GEPCHkLKS-GNAIFYINFR--------------AKSRDYRSVVRRTTDGkTGHI-I 307 Arabidopsis lyrata subsp. lyrata
XP_002867431 269 -NREASPHMiLKA-NNAIFYISFKGNGDPs--------GTPMEYQAIVRRTMDGmPGHICL 319 Arabidopsis lyrata subsp. lyrata
EFH43689     233 -SGEESPHLkLKA-NNAIFYMSFKGNSDH---------PSDVEYQAIVRKTMDGtPGHIRL 282 Arabidopsis lyrata subsp. lyrata
Q8LFV1       301 -D--FKSKEkLKA-GNAIFYISFRGVNTPh--------GPPQDHRAIVRRTVDGiPGHVCL 349 thale cress
XP_009128597 219 -D--VKSNEkLKA-GNAIFYFSFKNLNAPp-------hGLCQDHRVIIRRSTDGlPGHVCL 268 field mustard
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