Conserved Protein Domain Family
HABP4_PAI-RBP1

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pfam04774: HABP4_PAI-RBP1 (This model is not part of the current CDD release)
Hyaluronan / mRNA binding family
This family includes the HABP4 family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function.
Statistics
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PSSM-Id: 516423
Aligned: 67 rows
Threshold Bit Score: 55.459
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_011406826 228 GKREFERRSGS--DKssvKAFDKREGGGAHNWGTVKDDMnTNEWATDEqeaatdnNATELNEen------tNDQSEVVEG 299
XP_007390441 107 GRRPFDRHSAT--GK---TDSEKKVHQG---WGGDEGTAeLKAETAAE-------KDAQAEAgnpia-egwgAEASTDAW 170
5_pfamImport   1 GKRDFERYSGN--DKlafRPEDSMGGCG-----APQVDPrEPLCV--------------------------MTMSPCRVS 47 
NP_064370    212 GKRDFERYSSN--DKt-nRMEDSMGGCGIRPWGSGKDT----------------------SDteppapmeeTSMMEECQG 266
XP_027302259 180 GKREFERQSGN--DKtgvRAVDKKGGSGARNWGTARDDM---------------------SEveqtapveeTAETAQQQG 236
XP_008101417 196 GKREFDRQSGS--DKtgvRGEEKRGGSGPRNWGTVKDDLsELEQTAPMe---------------------eTAETEENPA 252
XP_015221390 170 GKREFERHSGS--DRagiRPEEKRGGGGPRNWGSVKDE--M-------------------SDmehgvpneeAGDTEEAHG 226
XP_007240921 182 GKREFERHSGS--DRanvRPEEKRGGSGPRNWGSMRDHVnAVADVTPD-------VTEEVGEgee-----aaDAADTDAE 247
2_pfamImport   1 GKREYDRQSGTvrCRg-iSPEEKRGGSGRWNWGSFEESVrNESMem------------------------vSHNPEGAQT 55 
XP_011613909 159 GKREYDRHNGTg-----iSPDEKRGGRGPWNWGCVDEAAsELMEVTsd----------------------vL-KSEEPQV 210 torafugu
XP_011406826 300 EGETESKVapgseeke--------geeeeeekETPQFTLDEYKAMQDKKR-TVPLH-KERRPGE 353
XP_007390441 171 AAPAEGAEgaevvegttpaegekaegrrreeeEDNTLTLDEYFKQQKEKQlEIIPQlETRKANE 234
5_pfamImport  48 ELEVEEET------------------------QVYEMTLDEWKNLQEQTR-PKPEF-NIRKPES 85 
NP_064370    267 ALDEESAAkvpele-------------veeenQVQEMTLDEWKNLQEQTR-PKPEF-NIRKPES 315
XP_027302259 237 TTEGEPLKkvaeg--------------epieeVVQEMTLDEWKNLQQQNR-PKPEF-NIRKPES 284
XP_008101417 253 APEGEAPTkiaeg--------------epveeVAQEMTLDEWKNLQEQSR-PKPEF-NIRKPET 300
XP_015221390 227 APEGDAENqgtege------------gevredYVAEMTLDEWKALQEQNR-PKKEF-NIRKPET 276
XP_007240921 248 NQPLETEEvi---------------------eVAIEMSLDEWKALQEQSR-PKAEF-NIRKAET 288
2_pfamImport  56 AAEGDDSNrtmdee------------devmvqVAMEMTLDEWKALQETSR-PKVEF-NIRKSEN 105
XP_011613909 211 PVEDGTQNqsveed------------gemvvqVAMEMSLDEWKALQEMSR-PKAEF-NIRKAEN 260 torafugu
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