Conserved Protein Domain Family
DarP

?
pfam04751: DarP (This model is not part of the current CDD release)
Dual-action ribosomal maturation protein DarP
The entry, previously known as DUF615, represents the Dual-action ribosomal maturation protein DarP (also known as YjgA) from Escherichia coli and related proteins. This protein binds pre-50S ribosomal subunits near the 23S rRNA L1 stalk, where it probably mediate correct positioning of the L1 stalk. It plays a dual role in the late stages of assembly of the 50S ribosomal subunit where it promotes peptidyl transferase center maturation by modulating the docking of 23S rRNA helix H68, and maintains the stability of helix H89 with the help of uL16 (rplP), facilitating the final maturation of the peptidyl transferase center.
Statistics
?
PSSM-Id: 516411
Aligned: 116 rows
Threshold Bit Score: 77.1825
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_012824107  23 FGPSKTERKREAHAARDLGAELCALSDAQLAAFPLSDSLLAAIGEARNINAHGARKRHLQYIGKLMRQHDVVAIEAELNR 102 Halothiobacillu...
Q60AI9        19 rRRNHAKMKRASAELLELGRELVLLPQEGLDRLALPEPVAEAVRLGRRIDAHGALKRQIKYIGKLLRQIDAGPIRDALDA 98  Methylococcus c...
WP_014147716  20 VRPNKSQIKRDIAVLFDLGEELVGLSTAQLSALELPEELHKAVIGTVGMPPKGARKRQLKFICGLLRKLDVEPILEKLAR 99  Methylotuvimicr...
WP_005373860  19 VRPNKTRIKKEIAALFKLGEEMAGLSPDQLERLMLPERILQAVREVSGMPHTGARKRLLKYIAGQLHQIDVEPYAEKLAR 98  Methylomicrobiu...
WP_043107910  12 QRPNKTALKREIAARAELLERATGLNDHELARLGLDEDAIAEIGKVRAIRPSGARKRQLKYCLKQLADEDFDNLRIYLED 91  endosymbiont of...
6_pfamImport   1 DGPSKSRIKRDLQALQAFAEQLVSLPQVELEEIDLSEATRAAIDETARIKDHRALRRHYKRIANCLARENSEPLKSLLIA 80 
WP_005223190  18 LGPSRSQIKRERQALQALAERMVGMPRAELLRLSLSEATWAAIDETPRIKDLRARKRHWKRIANLLEREDMDAVHALLDE 97  Marichromatium
WP_015279469  15 sGPSKSQLKREHVALQQLAERLAAMPRAELERLGLSAATWAALDETARIKDLRARKRHWKRIANLLEREDQDAVRMLVEE 94  Thioflavicoccus...
WP_012970078  18 QGPSKSQIKRDKLVLQALAERMASMPHHELERLNLSEATWVALDETPRIKDLRARKRHWKRIANLLEREDMEAVHVLIDG 97  Allochromatium ...
WP_014777301  18 eGPSKSQIKREKLALQALAERLAGMPRAELERLKLSQATWAALDETARIKDMRALGRHWKRIANLLEKEDMAAVHALMDQ 97  Thiocystis viol...
WP_012824107 103 IDP-DAPQNI--RLQHESERWRTRLLSDDASAVTDFITRyPQVDIQALRLLLRQVAKE-RAEQ 161 Halothiobacillus neapolitanus
Q60AI9        99 MRN-HGAAAA--RRQHRIERWRNRLIAEGDEAVDALMEEfPSADRQLLRKLVRGAREE-RARA 157 Methylococcus capsulatus
WP_014147716 100 IKN-QSAHAA--REHHKVERWRDRLISEGQDALTELIDEyPQTDRQLLRQLMRSAQKE-AAEA 158 Methylotuvimicrobium alcaliphilum
WP_005373860  99 LKN-KSAHAV--REHHLAEQWRDRLIAEGNEAVTALLDDyPEADSQQLRQLIRNAQKE-ITAA 157 Methylomicrobium agile
WP_043107910  92 LEDrQSQQVEvnRVFHRLERWRDRLIAEGDALIGEAAAEwPGLDRQQLRQLIRDARRE-RDTG 153 endosymbiont of unidentified sca...
6_pfamImport  81 RDA-RAREAS--ALHHQLERWRARLLAEGDAALTDFLNAhPNADHQQLRTLVRAARRDqehdr 140
WP_005223190  98 ADA-RERAAS--ARHHQLERWRERLIAE-EAALGEFIDAcPQVDRQHLRHLVRAARRD-AEQG 155 Marichromatium
WP_015279469  95 KAE-QARLAA--ARHHEIERWRERLIHEGDAALTELLDRhPDIDRQPLRQLVRAAQRDlGRgr 154 Thioflavicoccus mobilis
WP_012970078  98 AEE-RERAAT--AHHHALERWRERLITEGDGAVTEFIEAcPEVDRQQLRALVRAAQRD-TERG 156 Allochromatium vinosum
WP_014777301  98 AGE-RERELN--ARHHALERWRERLIAEGDAALADFIEQrPEVDRQQLRTLIRAAQRD-TERG 156 Thiocystis violascens
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap