2NLY,2QV5


Conserved Protein Domain Family
Polysacc_deac_2

?
pfam04748: Polysacc_deac_2 
Click on image for an interactive view with Cn3D
Divergent polysaccharide deacetylase
This family is divergently related to pfam01522 (personal obs:Yeats C).
Statistics
?
PSSM-Id: 398425
Aligned: 216 rows
Threshold Bit Score: 108.382
Threshold Setting Gi: 122498802
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2NLY_A          8 IIIDDFG-GDVKGVDDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKK-GKisWLGPSGITSNLSVGEV 85  Bacillus halod...
WP_013300066  178 VMVSGLGlDPVTTDRALLALPAEIGVSFSAYARNVDARLSAALAAGREAALEIPMATRGlSEa-VLGPAALSPDRAAEGN 256 Parvularcula b...
jgi:Acry_0902 109 VMMGGIGeARQASRDAIRSLPPAVSLALTPYGPHLRSVVAAARAAGHETLMGIPMQTDRePAi-TEGDEALRGSELDPVN 187 Acidiphilium c...
Q5FU30         33 IVLQGFGySDALTYDVLSRIPAPVAVGISPYVSNISDIIARAHASHREVYVTLPMQSAHpERv-DEGPHALGYGNSAADD 111 Gluconobacter ...
WP_003622804  118 lLIDGIDqTDDLTTEAINSLPGPVSLGISPYAANPEELMNAARQHRHETLLSLPIQDNAtKNt-DAGPKALGLLLSPQQN 196 Acetobacter pa...
WP_014746492  172 LVIGGLGfSETATKAAID-LPGAVTLAFSPYAPELGRWIGLARQAGHEVMIELPMEPDGyPRn-DAGPAALLTTLEPARN 249 Tistrella mobilis
WP_014102734  171 ILVNDVGiSETLGTSVLKDLPPEISVAITPYATAPDQWMKRAREAGHEVWLKLPVESADyPLs-DPGPQTLLINAIEKQN 249 Micavibrio aer...
Q2RV13        362 IIVSGLGmREAATQAAITRLPPDVTLAFDPYAPALPAWMGKARQSGHETLLELPVEPTGyPAi-DPGPLALLSGLSEIEN 440 Rhodospirillum...
CDL00082      238 VIVTGLGlDREATDMAIDRLPPEVTLAFSPYAGGLDNWVKKARDAGHEVLLTLPVEESGfPAr-DPGPWGLLTSARPEDN 316 Magnetospirill...
Q2WAL9        266 VVVMDMGlDKAATEAAIAKLPPEVTLAFSPYAQGLDKWVKKARDYGHEVMMVLPADASGaQPr-DPGPLGMTNSVPPESN 344 Magnetospirill...
2NLY_A         86 KSRVRKAFDDIPYAVGLNNHM-------GSKIVENEKIMRAIL------EVVKEKNAFIID-------SGTSPH-SLIPQ 144 Bacillus halod...
WP_013300066  257 ATRLDWVLSRAPAYPYVTNFE-------GDLFASNAEAMQAFL------NALDRAGLGYLD-------DT-----GKGGA 311 Parvularcula b...
jgi:Acry_0902 188 LKHLDWALSRSAGYVGVTDEI-------G--MSVDETYLTQLLnrhwlgKQLRPTGLLLVTa-----sQGSGVP------ 247 Acidiphilium c...
Q5FU30        112 QRELEWCLSRAAGAEGLTDASengddqpGGGYATSPD-FSPIA------SAISSKGLLYLA-------GSAQDG------ 171 Gluconobacter ...
WP_003622804  197 MDNLNWALSHLAGYVGVTNAFag---qnGGSFPQSE-SFKSLV------KAIDQRGLLYLDatpgtqtEGASST------ 260 Acetobacter pa...
WP_014746492  250 RERLQWTLSRVTGYVGVKPLM-------GDRFMRSPQHLRPVL------DELQERGVMMVV-------QEESDT-DVGAA 308 Tistrella mobilis
WP_014102734  250 FNKLYWALSRGTGYVGVVTGR-------EPAFIKSLNDMRPMI------NDIYHRGLGFVD-------GDIQPT-DVPRT 308 Micavibrio aer...
Q2RV13        441 RSRLETVLGRSGGYVGVLATA-------AGRFTDTPASLRGLL------DALKSRGLLYVH-------RGSPTAvNVNGD 500 Rhodospirillum...
CDL00082      317 AERLQKVLARTSGYVGVLAN--------DGPFTKSRQ-LAPIL------AMLKERGLLYVG-------NGAEAE------ 368 Magnetospirill...
Q2WAL9        345 LARLEGVMARGGAYTGLISL--------GDKFAASEQIVQTL-------GKLRDHGLLYVG-------PGAAPA-DRTPA 401 Magnetospirill...
2NLY_A        145 LAEELEVPYATRSIFLDNthSS-RKEVIKNMRKLAKKAKQGSEPIGIGHVG-VRgdeTYAGIRSMLDEFQAESIQLVPVS 222 Bacillus halod...
WP_013300066  312 IARALNLPYGEVDLVLEP--NDpEAADRLRAVSRRALSAERPLIVKVYAS--DG---NLDAVMAWVDTLQSGEVGLVPPS 384 Parvularcula b...
jgi:Acry_0902 248 ----SGVPGRVADVVIHP--EMsVDEQRAALKRLAATAVASGSALGVISSPtAD---DIAVLAQWCQGLKADGLVLVPVS 318 Acidiphilium c...
Q5FU30        172 ----RRTRGMTATAWIDG--DTdAATLDSRLAALLPQDGKPAKILLMVGPItPV---MIDRLANWLKGPAAQNFVVVPPS 242 Gluconobacter ...
WP_003622804  261 ---------ATADVVVNT--DTdIVNIDIQLLKLQQLARQNGRAIGILGPLrPV---AMACLRAWLPHLKDMGIALVPVS 326 Acetobacter pa...
WP_014746492  309 LAREIGVPRATARLTVDA--VAtPQAIDQRLNALESLARREGKALAVADAW-PV---TLERVANWIRTIESRGVAFAPAT 382 Tistrella mobilis
WP_014102734  309 MAVGMDAPYASTNLWIDH--TLtPEAIAAALTSLERTAANNGTAIGFVNAN-PL---TLKALAEWAPTLQKKGLVLAPLS 382 Micavibrio aer...
Q2RV13        501 AAPPVNIVTAR----IDD--TPnQRAIDARLEYLGQVARAQGYAIGVVGAS-PV---ALYRLNRWLGGLEGEGLVLAPAS 570 Rhodospirillum...
CDL00082      369 ----PKPPVAVLGGWLDG--EVfRDAVESRQKSMAGLVREKGSRAVLASAR-PA---TLESMLPWLGSLTAEGVTLAPVS 438 Magnetospirill...
Q2WAL9        402 LAPVTAVADA----------DLfREAIEMRFNQVSIAARTKGKALVVINPR-PL---SFDRLLPWLNDFDGQKLVIVPVS 467 Magnetospirill...
2NLY_A        223 QLL 225 Bacillus halodurans
WP_013300066  385 AAM 387 Parvularcula bermudensis
jgi:Acry_0902 319 ALV 321 Acidiphilium cryptum JF-5
Q5FU30        243 AFa 245 Gluconobacter oxydans
WP_003622804  327 QIV 329 Acetobacter pasteurianus
WP_014746492  383 ALA 385 Tistrella mobilis
WP_014102734  383 AAt 385 Micavibrio aeruginosavorus
Q2RV13        571 AVM 573 Rhodospirillum rubrum ATCC 11170
CDL00082      439 ALp 441 Magnetospirillum gryphiswaldense MSR-1 v2
Q2WAL9        468 TLV 470 Magnetospirillum magneticum AMB-1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap