Conserved Protein Domain Family
DUF608

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pfam04685: DUF608 (This model is not part of the current CDD release)
Glycosyl-hydrolase family 116, catalytic region
This represents a family of archaeal, bacterial and eukaryotic glycosyl hydrolases, that belong to superfamily GH116. The primary catabolic pathway for glucosylceramide is catalysis by the lysosomal enzyme glucocerebrosidase. In higher eukaryotes, glucosylceramide is the precursor of glycosphingolipids, a complex group of ubiquitous membrane lipids. Mutations in the human protein cause motor-neurone defects in hereditary spastic paraplegia. The catalytic nucleophile, identified in Saccharolobus solfataricus, is a glutamine-335, with the likely acid/base at Asp-442 and the aspartates at Asp-406 and Asp-458 residues also playing a role in the catalysis of glucosides and xylosides that are beta-bound to hydrophobic groups. The family is defined as GH116, which presently includes enzymes with beta-glucosidase, EC:3.2.1.21, beta-xylosidase, EC:3.2.1.37, and glucocerebrosidase EC:3.2.1.45 activity.
Statistics
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PSSM-Id: 516375
Aligned: 31 rows
Threshold Bit Score: 293.399
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7KT91       505 GRFGYLEG-HEYRMYNTYDV-H-------FYA-SPALAHLWPNLQVSLQYDF--------KDAIAAELNDTRKMLY---- 562  fruit fly
Q1IR11       436 DSFSYLEC-FDYAYYGTLDV-R-------FYG-SFPLAKFWPEIEKQEMREY--------ADTIPENIDQKYIWAW---- 493  Candidatus Kor...
Q7NHS5       487 GRFAVLES-IDYRWYDSLDV-R-------LYG-SFALLINWPEIDKAVLRSY--------ADAVPDEDDSTRIIGY---- 544  Gloeobacter vi...
Q8DMC7       429 GQFAVLEC-LDYRWYESLDV-R-------LYG-SFALLQLWPELEKSVMRAF--------ARAIPTADPTLRIIGYfyrg 490  Synechococcus ...
P73619       418 GQFGVCEC-MDYRWYESLDV-R-------LYG-SFGLLMHWPKLEQAVMLAF--------ARAIPTEDPKERVIGY---- 475  Synechocystis ...
Q6EUT3       485 GRFGYLES-WEYRMVNTYDV-H-------FYA-SFALAELWPELEITIQSEF--------TDQVYHSIEKPTRFHM---- 542  Caenorhabditis...
XP_045094279 446 GRFGYMES-WEYFMINTYDV-H-------FYS-SWAILKNWPQIEMSMQMDF--------ADQVDRVDYGTATSLA---- 503 
KAF8385466   444 GRFGYMES-WEYLMYNTYDV-H-------FYA-SAAFIENWPQLEVSMQLDF--------SEQLNREDTRLHKTLM---- 501 
Q8A3P6       409 GRLWTWEG-----CADNWGScHgscthvwNYA-Q-AIPHLFPSLERSLRHTEfeegqdlkGHQVFRVN------------ 469  Bacteroides th...
Q97VF2       305 GRFAVYEDpFVTKLMNTIGSmT-------FDGlGFTLLELYRDLVISADNYF---------------------------- 349  Saccharolobus ...
Q7KT91       563 ---DGKV------MPRKVKNCVPHDLG-DPDE---------------EPFTLINCYNIHDVNDWKDLNTKFVLQVYRDYY 617  fruit fly
Q1IR11       494 ---KSDNehklepTQRKVAGSAPHDLG-SPLE---------------DALILPNQYNYQSVSFWKDLNSKYVLMVWRDYV 554  Candidatus Kor...
Q7NHS5       545 ---TKTV------AKRKSRDALPHDLG-APNE---------------DPWIKNNYTTYQDCNLWKDLPCDFVLQVYRDYV 599  Gloeobacter vi...
Q8DMC7       491 dpeTAYK------APRKLANAVPHDLG-APNE---------------HPWEKTNYTAYQDCNLWKDLASDFVLLVYRDFL 548  Synechococcus ...
P73619       476 ---NLSL------APRKVKNATPHDLG-APNE---------------HPWERSNYTAYQDCNLWKDLGSDFVLLVYRDFL 530  Synechocystis ...
Q6EUT3       543 ---EGDW------ANVKTASRVPHDLG-NPAD---------------EPWIATNAYVMHDTGKWKDLNMKYVLTSWRDYV 597  Caenorhabditis...
XP_045094279 504 ---DGDT------MTIKSYDRIPHDMG-HPSNphlpsiqehhrlsvaDPWIHTNAYILHDTGHWKDLNLKFVISCYRDWK 573 
KAF8385466   502 ---DGET------VIVKKRGRLPHDMG-HPID---------------SPWEYTNTYCLHDTCEWKDLNLKFILASLRDYQ 556 
Q8A3P6       470 -------------LPIRPTRHNFHSAA--------------------------------------DGQLGGIMKVYREWR 498  Bacteroides th...
Q97VF2       350 -------------MNYVNYGETPHDVGeESIE---------------DPIYGASY-----PYWWTDLGPTLVLMLYRDYV 396  Saccharolobus ...
Q7KT91       618 VL-NElaqaqsdnaskfssiefidkeslyelysqdnkrknsadekqqnrksasmyinetngkvylmdaIGYLKAMYASCK 696  fruit fly
Q1IR11       555 MSgSKd--------------------------------------------------------------KAFLQYNYNAVK 572  Candidatus Kor...
Q7NHS5       600 DTgKRd--------------------------------------------------------------LGFVRYCWPASK 617  Gloeobacter vi...
Q8DMC7       549 FTgGTd--------------------------------------------------------------LNFARECWPAVV 566  Synechococcus ...
P73619       531 LLpDAd--------------------------------------------------------------GEFLGECWPSIV 548  Synechocystis ...
Q6EUT3       598 VLsNEh--------------------------------------------------------------EDFLFHTWPAVR 615  Caenorhabditis...
XP_045094279 574 MIaEGee-----------------------------------------------------------dsQEILEFFLGKCT 594 
KAF8385466   557 QSiKTenp----------------------------------------------------------kaTEVLAHLFERSM 578 
Q8A3P6       499 ISgEN----------------------------------------------------------------EFLISMYPKVK 514  Bacteroides th...
Q97VF2       397 FT-SN---------------------------------------------------------------REILEKNYNKIK 412  Saccharolobus ...
Q7KT91       697 AIMERTIE-YDKDNDGLIENTKMPDQTYDS--WVMDGPSAYCSGLWLAALQAMSAMATIL-------------DQPNDCL 760  fruit fly
Q1IR11       573 QSMQFLRQ-FDKNNDGLIENDGYPDQTYDN--WSARGESAYSGSLYLAALRATEEMAKLL-------------GDQRTAA 636  Candidatus Kor...
Q7NHS5       618 AALVRLKTtFDQDGDGFPENGGPPDCTYDA--WPLKGISAYCGGLWLAALLAAVEMGKLV-------------GDAAAVQ 682  Gloeobacter vi...
Q8DMC7       567 AALDHLKQ-FDQDGDGLPENGGAPDQTYDD--WKLQGVSAYCGGLWLAALEAAIALGTLL-------------Q-QPQVE 629  Synechococcus ...
P73619       549 AALDYLKG-FDLDNDGIPENSGAPDQTFDD--WRLQGISAYCGGLWIAALEAALVMGQYLlenppqqtdldamEIQTAIA 625  Synechocystis ...
Q6EUT3       616 MIMLEALEnWDQDGDGMIENFGKADQTYDA--WQMEGVSAYCGSLWLASLRVAIEMAGLM-------------KDDETQQ 680  Caenorhabditis...
XP_045094279 595 KIVDGALEnWDKDKDGMIENDGFADQTYDV--WKMTGTSAYCGSLWIAALTSYIQMLKRA-------------GIPTKD- 658 
KAF8385466   579 EIIEAGKKeWDVDGDGMIENGGFADQTYDV--WIMTGTSSYCGSLWIAALEAARRMAEIL-------------GRKTEEA 643 
Q8A3P6       515 KSLDYCIStWDPRRVGSIEEP--HHNTYDIefW---GPDGMHNSFYYGALSAFIRMSEFL---------------DKDVT 574  Bacteroides th...
Q97VF2       413 EIIDWLIR-KDMDNDCIPDSKGGYDNSYDG--THMYGASSYIASMFLSALTAFIKMSEIL-------------DVKIDDK 476  Saccharolobus ...
Q7KT91       761 RYQDILEKGKRSLEEKLWNGSYY-------------------------------------RFDLSHSHRDTIMADQLCGH 803  fruit fly
Q1IR11       637 DTAALFKRAQDSFVKKLWNGTYF-------------------------------------NYDVGSSYKDAIMAEQLAGQ 679  Candidatus Kor...
Q7NHS5       683 QFGAWYAQAQPLYEKTLWNGRYY-------------------------------------RIDSQSKNSEAIMADQLCGE 725  Gloeobacter vi...
Q8DMC7       630 IYRQWLSQARPRYHQLLWNGEYY-------------------------------------RLDTGS-GSDVIMADQLCGQ 671  Synechococcus ...
P73619       626 RYETWLAQARSLYQDTLWNGEYY-------------------------------------NLDSQS-GSKVVMADQLCGQ 667  Synechocystis ...
Q6EUT3       681 LFRNTLEKAKKVFIDTLWTGTYF-------------------------------------RFCERSRSRETVMADQLCGY 723  Caenorhabditis...
XP_045094279 659 -YEEKLLMAYEAYTTKLWNGKFF-------------------------------------KFDELPDNSKIVMADQLCGF 700 
KAF8385466   644 SLAQQVDKARSIFIKKLWNGRYF-------------------------------------NFDE---TSSSIMADQLCGV 683 
Q8A3P6       575 EYKKLLKKGRKFTETGLFNGEYFiqkiewrglnakdptvaqsfhssyspeakeilekegpKYQ----YGNGCLSDGVLGS 650  Bacteroides th...
Q97VF2       477 -YYRFLECGKKTFN-SLWNGKYFil---------------------------------wkKNDE---ENTSCLNSQLLGQ 518  Saccharolobus ...
Q7KT91       804 WYLKSCGFDYe----IYPKENVRTALKRIYDNNVMG------------F----HEGNIGAANGFI-ANaseptkpGHVDN 862  fruit fly
Q1IR11       680 WYASLTGLGD-----LVPRDMQHSALKKVYDFNVMK------------L----QNGTMGALNGIS-AS-------GEVLK 730  Candidatus Kor...
Q7NHS5       726 YYAQVCNLAD-----IVPEPQARSALETVYQTCFVK------------F----YGGRFGCANGTN-AD-------GSFIG 776  Gloeobacter vi...
Q8DMC7       672 FYAQLLGLVD-----IVPPDCCDRALRKIYDTCFLK------------F----HNGQFGAANGLL-PN-------GQPEN 722  Synechococcus ...
P73619       668 FYARLLNLPD-----VVEHHYAEKALAKVYDTCFLK------------F----AHGELGAANGLL-PD-------GSPQN 718  Synechocystis ...
Q6EUT3       724 WFLQS--VSPeladeLLPNHMVRSALDTIYRLNVCK------------F----GNGRMGAVNGMK-PS-------GVVDR 777  Caenorhabditis...
XP_045094279 701 WALTAMDEPI-----QVSEGKIQSALETIFKYNVEM------------Y----DGGKCGAVNGFL-AS-------ERVDG 751 
KAF8385466   684 WFMAALDGTTdk--mLIDKEKVSSVLDTIFANNVKK------------FgskeSAGKSGAANGWK-ED-------SGLDT 741 
Q8A3P6       651 WLSRMCGMEE-----TLNTEKVKSHLLSVHRYNFKKdltdhanpqrspY----ALGKEGGLLLGSwPK-------GGKLS 714  Bacteroides th...
Q97VF2       519 FWCDILGLPP-----ITDHDKINTALRSIYELN---------------F----KASKYCLTNAVR-ED-------GSVDS 566  Saccharolobus ...
Q7KT91       863 -SNIQAEEVWPGVVYALAATMIQ------EGMFEEAFQTAGGMYKTLSQRIGMNFETP---EALYGE--KRYRSI-GYMR 929  fruit fly
Q1IR11       731 -DNEQTEEVWTGVTFAVAATMLQ------NGLREEGFNTAKGVYNVVYDQKGYWFRTP---EAYDTN--GMYRAS-MYMR 797  Candidatus Kor...
Q7NHS5       777 -DTEHPSEVWTGINFGLAAFMIR------NGMRREGMAIAEAVVANVYGG-GLQFRTP---EALTPA--RTFRAC-MYLR 842  Gloeobacter vi...
Q8DMC7       723 pHATHPLEVWTGINFGLAAFLWQ------RGMIDEAWRLAEVVVRQIYEN-GLQFRTP---EAITAN--GTFRAC-MYLR 789  Synechococcus ...
P73619       719 pNDTHPLEVWTGINFGLAAFLIQ------MGMKEEALKMTETVVNQVYNN-GLQFRTP---EAITAV--GTFRAS-HYLR 785  Synechocystis ...
Q6EUT3       778 -EYIQADEMWTGVTYAVASLLIQ------QGEVEKAFHTASGSYLTCFEETGLQYQTP---EALYES--KFYRAI-GYMR 844  Caenorhabditis...
XP_045094279 752 -SSIQSEEVWAGITYSLSAMMIEkapiylQGMDEMAFKTSEGLFHSIWNRFPLQYQTP---EAITAD--GMYRAL-GYMR 824 
KAF8385466   742 -TAIQSEEMWTGTTYALASFFAL------MGDRERCFAVAEGVYDSCWKRAGLQYQTP---EAMFQW--MFYRAI-GYMR 808 
Q8A3P6       715 lPFVYSNEVWTGIEYQVASHLML------QGEVEKGLEIVRACRQR----YDGSVRNPf----------NEYECGhWYGR 774  Bacteroides th...
Q97VF2       567 -STAQLRSCWPRVSFAVAAHMIL------RGMVKEGIEVAKREWETIKEL------NPfdqSSRIDAidGKYVGLmSYIG 633  Saccharolobus ...
Q7KT91       930 PLSIWSM 936  fruit fly
Q1IR11       798 PGAIWSM 804  Candidatus Koribacter versatilis Ellin345
Q7NHS5       843 PMAIWAM 849  Gloeobacter violaceus
Q8DMC7       790 PMAIWAL 796  Synechococcus elongatus
P73619       786 AMAIWAV 792  Synechocystis sp. PCC 6803
Q6EUT3       845 PLSIWAM 851  Caenorhabditis elegans
XP_045094279 825 PLSIWAI 831 
KAF8385466   809 PLAIWNI 815 
Q8A3P6       775 ALSSYGL 781  Bacteroides thetaiotaomicron
Q97VF2       634 STSVWLL 640  Saccharolobus solfataricus
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