4RGW,5FUR,4OY2


Conserved Protein Domain Family
TAFII55_N

?
pfam04658: TAFII55_N (This model is not part of the current CDD release)
TAFII55 protein conserved region
The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits it acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminus of the protein.
Statistics
?
PSSM-Id: 516362
Aligned: 118 rows
Threshold Bit Score: 113.374
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4RGW_B        13 LESQFILRLPPeYASTVRRAVQSGHvnlKDRLTIELh-PDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTAD 91  human
XP_045095715  16 WENHLVLRVPDrFVDRIEKIVNEEPg--AEKLAIDVn-DDNRAVQLQLGKEILKATIMDLPTITEVHKTIDNKIIHKVTD 92 
3_pfamImport   1 WEEHLILRVPAdVVNRMERAVNNEPg--AEELGVNIc-DETRVVQIRIGNQILPAKLLDLPTINEVHKTFDNATLFKVTD 77 
Q20788        23 WEEHLILRVPPdVVNRMEKAVNGEId--AEELGINFq-EDNRTVQIRLGNQILPAKILDLPTINEVHKTLDNSTLYKVTD 99  Caenorhabditis ...
XP_003098475  24 WEEHLILRVPAnVVNRMEKAVNDAPd--AEELGINIh-DDNRTVQIRLGNQILPAKILDLPTVNEVHKTLDKMTLYKVTN 100
EGT41519      21 WEEHLVLRVPGnVVGRMEKAAYDVPg--AEELEIDIs-EDNRTVKIRLGNQILPAKILDLPTINEVHKTLDNHTLYKVTN 97 
XP_004350179  55 CEDQLILRLPPqLADRVRKMIKQKHi--DTPIDLSF--KDGRQVQFKFGQEEYNAALLDLPCVLESHKTLDKSSYFKTGD 130
Q55BH6        72 SEDQILFRLPLhLADQVRNMIKQKQm--DIPVDFHF--KNDRQIQIKFGDQEYNANLVDLPCIVESHKTFDRVNFYKTAD 147 Dictyostelium d...
XP_003285609  85 SEDQLLFRLPPhLAERVRKMLKQKYm--DIPIDFQF--RNERQMIFKFGDETYNANLVDLPCVVESHKTYDKANYFKTAD 160
XP_004998651  43 EEEVFVLRLPEaEAVKLRTALDN-----NEDLGDRFvlQLGGRPNVVIDGKEFDAKLYNLPTVIEAHKTADSNYVYKVGD 117
4RGW_B        92 ICQMLVSTvdgdlyppVEEPVastDpkAS-------------------------------KKKDk-dKEKKFIWNHGITL 139 human
XP_045095715  93 VSQMVVAN--------ELVPAsksKknRKkkkeqtkkgevdnv---spvenepessapvpSAAPklsAKKMFQFPHGLTP 161
3_pfamImport  78 ISQIIICD--------DALPPrkeEknKQkqkgkglenqtpndssgegtstepgvnkpktARQIakeKAKEHHYPHGISA 149
Q20788       100 VSQMIICE--------GAMPIpkaErkKLnpegienrepkieve--gsgvenktnvqsktARQLakeKVKEYHYPHGITP 169 Caenorhabditis ...
XP_003098475 101 ISQIIMCD--------EAMPIskkEkkPSqkegsenmepkieeq--qesgegastvvvktARQLakeKVKEFHFPHGITP 170
EGT41519      98 ISQIIMCD--------EAMPAprkDkkKTepvaeenkqpkeene--sgegpstaevkvktARQLareKVKEYQYPHGITP 167
XP_004350179 131 VGQIIQVF--------DNHDPnnnNnnNNnn----------------------------eYPTTiedIPKDFKSTSGITP 174
Q55BH6       148 IGQMIIVN--------DNPPPpppPppPPtqsdqddlmdtsnn---nntttttttttttpLPNTaapNTINNILQTGLTA 216 Dictyostelium d...
XP_003285609 161 IGQMILVN--------DNNSNkenNesNDnnnsnnnnnn-----------nnnnnnnnskTNSVppnNVVNNMLTSGLTP 221
XP_004998651 118 VHQIVIAS--------EKAEDgggTe----------------------------------qAESyggRVLAVPFPHGLTP 155
4RGW_B       140 PLKNVRKRRFRKTAKKKYIEspD--VEKEVKRLLSTDAEAV 178 human
XP_045095715 162 PMRNCRSRRFRKQKAKKTMD--Td------eRLLRADLEAD 194
3_pfamImport 150 PMKNAKKRKFRKKKEKKIMA--VeeIEKELKRLLRSDLEAQ 188
Q20788       170 PMKNAKKRRFRKKKEKKTMA--VeeIEIELKRLLRSDLEAQ 208 Caenorhabditis elegans
XP_003098475 171 PMKNAKKRRFRKKKQKKTMA--VeeIERELKRLLRSDLEAQ 209
EGT41519     168 PMKNVKKRRFRKKKQKKTMA--VeeIERELKRLLRSDLEAT 206
XP_004350179 175 PTKDIVKKRFIEASKEKVLD--IakIEEEVIRLIKPGYNEQ 213
Q55BH6       217 ATKDIVKRKFKTYNRDKITE--LakIEEELVRLIKPGYADS 255 Dictyostelium discoideum AX4
XP_003285609 222 ASKDIVKRKFRVYNREKITE--LakIEEELVRIIKPNYGDG 260
XP_004998651 156 PLRNVRRRRFRPTAKPVVDQ--ApeIMEEVARLMNSDAQVD 194
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap