1YI7,1YRZ,3QZ4,3K1U,5C0P


Conserved Protein Domain Family
Glyco_hydro_43

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pfam04616: Glyco_hydro_43 
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Glycosyl hydrolases family 43
The glycosyl hydrolase family 43 contains members that are arabinanases. Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside backbone of plant cell wall arabinans. The structure of arabinanase Arb43A from Cellvibrio japonicus reveals a five-bladed beta-propeller fold. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Statistics
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PSSM-Id: 398349
Aligned: 31 rows
Threshold Bit Score: 211.795
Threshold Setting Gi: 859066854
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YI7_C         4 IKNPILRGFNPDPSICRADTd-YYIATSTFEWF------PGVQIHHSKDLVNWHLVAHPLNRTSLLDXKGNPNSggiWAP 76  Clostridium ace...
Q9KBQ8         8 YRNPFIEQRADPWVYKHADG--FYYFTGSVPAY------DCIELRRAKTLDGLREAEPKVVWRKYDRGPMSANI---WAP 76  Bacillus halodu...
Q8A1Z2       337 YANPVINFSLPDPTIIKGDDeyYYLYATESI--------KNVPIHRSRDLVNWYYVGTAFTDATRPNFEPKGRI---WAP 405 Bacteroides the...
Q97TI6        24 ADNPVVQTLYTTDPAPMVYNgtCYLYTGHDEDGstwytmKDWRCYSSTDMVNWTDNG-SPLAYNTFSWAKGDA----WAG 98  Clostridium ace...
Q81ZV8       441 TRSPVLPGLYADPDIQYLDG--RYWIYPTTDGFpgw-sgTRFKAFSSKDLVHWKDHGVILDLGPDVTWADKNA----WAP 513 Streptomyces av...
3QZ4_B         6 SGNPILPGFHADPEVLYSHQtkRYYIYPTSDGFpgw-ggSYFKVFSSKNLKTWKEETVILEXGKNVSWANGNA----WAP 80  Bacteroides the...
WP_000024779   4 wPNPFIEQR-ADPFILRDGSd-YYFIASV-PEY------DRLEIRRANSLEGLRAADPVVVWRKPESGPMSQLI---WAP 71  Salmonella
3K1U_A         9 ILNPIIIQRADPXIYKHNDG--YYYFTASVPEY------DRIEVRKAKTIEGLRNAEPVDVWRRHESGEXSNLI---WAP 77  Clostridium ace...
Q93J96        52 FRNPL--NSGPDPFMTHWKGa-YYLTTTQG---------GSIRMWRSPSLGTLLTADPVTVWTDTDPSRNRNI----WAP 115 Streptomyces co...
Q82P89        52 YTNPVKAQKGADPWLEYYNGn-YYLVTTSFT--------NELTMRKSPTLAGLATAPSVQIWSDTTSGRNANF----WAP 118 Streptomyces av...
1YI7_C        77 DLS----YHDGKFWLIYTDVk--vT-------DGxwkdchNYLTTCESVD---GVWSDPITL--------NGSGFDASLF 132 Clostridium ace...
Q9KBQ8        77 EIH----YIEGKWYIYFAAArt-aEtkaglfdHR------MFVLENESANpleGSWIEKGQIft----kwESFSLDATTF 141 Bacillus halodu...
Q8A1Z2       406 DIN----KIGDKYVMYYSM-----StwggewtCG------IGIATADKPE---GPFTDLGKLfrsn-einIQNCIDPFYI 466 Bacteroides the...
Q97TI6        99 QCI----PRNGKFYYYVPvtqk-------sggMA------IGVAVSNSPT---GPFVDALGHpla---ytgTGDIDPTVF 155 Clostridium ace...
Q81ZV8       514 AIA----ERDGKYYFYFCa------------eQQ------IGVAVADSPA---GPFKDALGKplvakgklAGQMIDPAVF 568 Streptomyces av...
3QZ4_B        81 CIEekkiDGKYKYFFYYS------AnpttnkgKQ------IGVAVADSPT---GPFTDLGKPiitssptgRGQQIDVDVF 145 Bacteroides the...
WP_000024779  72 EMH----RINGKWYIYFAAThtqaLdklgmfqHR------MFALECADADpltGKWTEKGQIkt----pfDTFALDATTF 137 Salmonella
3K1U_A        78 EIH----FINGAWYIYFAAApd-kNieddtfnHR------XFVIQNENENpftGNWVEKGRIkt----awESFSLDATIF 142 Clostridium ace...
Q93J96       116 EFY----RFGDRWYLYYT------AddgvddhHR------LYVLESERDDp-tGPYHFTAKLapp--nhaDDFAIDAGIL 176 Streptomyces co...
Q82P89       119 EIH----FFNGKWYLYYSGAq---SgaaccdtQR------THVLESAGADp-mGPYTYKNSLtgsn-lnpGGWLIDASVL 183 Streptomyces av...
1YI7_C       133 HDNd-GKKYLVNXYWDQRtynHNFYGIVLQEYSDKEKKLIGKA-KIIYKGT-----------DIKYTEGPHIYHIGDYYY 199 Clostridium ace...
Q9KBQ8       142 EHK--GVRYLVWPQKDPSi--EGNSNLYIAEMENPWTIKGEQV-MLSKPEFdwe------viGYKVNEGPAVIKRNGKVF 210 Bacillus halodu...
Q8A1Z2       467 EDN--GKKYLFWGSFHG---------IYGTELTDDGLSLKKGApIEQIAGT--------------AYEGTYIHKRDGYYY 521 Bacteroides the...
Q97TI6       156 IDNd-GQAYLYWGN----------PNLYYVKLNQDMISYSGKIvQVPLTTAgfgvrkgnssrPTLYEEGPWFYKRNGMYY 224 Clostridium ace...
Q81ZV8       569 TDDd-GTSYLYWGN----------GHGYVVPLNDDMVSYDATKvKDITQPD--------------FREGSFVVERQGTYY 623 Streptomyces av...
3QZ4_B       146 TDPvsGKSYLYWGN----------GYXAGAELNDDXLSIKEETtVVLTPKGgt-------lqTYAYREAPYVIYRKGIYY 208 Bacteroides the...
WP_000024779 138 YHQ--GKQWYLWAQKAPDi--AGNSNIYLAELENPWTIKGEPV-RLSKPEYdwe------crGFWVNEGPAVVVHGDKLF 206 Salmonella
3K1U_A       143 EHN--EKLYYVWAQQDINi--KGHSNIYIAEXENPWTLKTKPV-XLTKPELewe------ikGFWVNEGPAVLKKNGKIF 211 Clostridium ace...
Q93J96       177 QLG--GRLYLAYSGINQY----QHNGINIAPMSNPYTVSGNAVaIDAAGGC------------PEVREGPEFLYRGGRVW 238 Streptomyces co...
Q82P89       184 QYN--SKLYLVGSGSING----STQSLVIAPMSNPYTLSSSSFtVISSPTLswe------tsGAPVNEGPEPLYHDGRTF 251 Streptomyces av...
1YI7_C       200 LFTA----EGGTTYE-HSETV---ARSKNIDGPYEIDPEYPLLTSWh----DPRNSLQKCGHASLVHTHTDE-WYLAHLV 266 Clostridium ace...
Q9KBQ8       211 IAYS----ASATDHH-YCMGLlwaNEEADLLDPASWTKSPTPVFQT-----SEENGQYGPGHNSFTVTEDGKhDVLVYHA 280 Bacillus halodu...
Q8A1Z2       522 LFASigrcCEGLKST-YTTVV---GRSKNLFGPYVDKKGRSMSDNHheiliQKNKAFVGPGHNSELVTDKKGnDWMFYHA 597 Bacteroides the...
Q97TI6       225 MVYA----AGGIP---EYISY---STSKSPTGP--WYYKGVIMPSQ---------GRSFTNHPGVIDF--KGnSYFFYHN 281 Clostridium ace...
Q81ZV8       624 FMWS----EDDTGSEnYHVSY---ATGPSPLGP--WTKRGTILSK------RPEYGIKGTGHHSVVNVPGTDdWYIVYHR 688 Streptomyces av...
3QZ4_B       209 FFWS----VDDTGSPnYHVVY---GTAQSPLGPIEVAKEPIVLIQ------NPKEEIYGPAHNSILQVPGKDkWYIVYHR 275 Bacteroides the...
WP_000024779 207 ISYS----ASATDEN-YCMGLlwiNVNDDPRDPANWHKSPRPVFTT-----SYENRQYGPGHNSFTQTPEGE-NVLVYHA 275 Salmonella
3K1U_A       212 ITYS----ASATDVN-YCIGXltaEENSNLLDKNSWTKSQTPVFKT-----SXENHQYGPGHNSFTVSEDGKhDVIVYHA 281 Clostridium ace...
Q93J96       239 MTYS----TCDTGKPdYQVRMmsmPLNADPLVPGNWHQHQGAVFSR-----ADDRGVFGPGHHAFFTSPDGTeDWIVYHA 309 Streptomyces co...
Q82P89       252 LTFS----ASYCQTAdYKLGQlelTGG-DPLSPASWTKKQNPVFQR-----DDAAGVYGPGHNGFFTSPDGTeNWIVYHA 321 Streptomyces av...
1YI7_C       267 GRPlpvgnqpvleQRGYCPLGRETSIQRIEWV-DNWP 302 Clostridium acetobutylicum ATCC 824
Q9KBQ8       281 RSYke------ieGDPLYDPNRHARLKLFTWDkDGFP 311 Bacillus halodurans
Q8A1Z2       598 VSV-------------ANPEGRVLMMDRVQWK-GGWP 620 Bacteroides thetaiotaomicron
Q97TI6       282 GAL-----------PGGSGFTRSVCIEQFKYNaDGTF 307 Clostridium acetobutylicum
Q81ZV8       689 FALsg------pgKAGGDGTHRETTIDRMTFAaDGTI 719 Streptomyces avermitilis
3QZ4_B       276 INKn--------hLNDGPGWHREVCIDRXEFNpDGTI 304 Bacteroides thetaiotaomicron
WP_000024779 276 RNYte------ieGDPLYDPNRHTRLKRVRWDeNGMP 306 Salmonella
3K1U_A       282 RNYte------ikGDPLYDPNRHTRAQIINWReDGTP 312 Clostridium acetobutylicum
Q93J96       310 KTT-----------SLNTYTNRTTRAQRFTWRaDGTP 335 Streptomyces coelicolor
Q82P89       322 NSS----------ASGGCGNGRTTRAQKFTWNaDGTP 348 Streptomyces avermitilis
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