Conserved Protein Domain Family
Ogr_Delta

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pfam04606: Ogr_Delta 
Ogr/Delta-like zinc finger
This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.
Statistics
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PSSM-Id: 398341
Aligned: 28 rows
Threshold Bit Score: 46.1475
Threshold Setting Gi: 122641713
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q3Y3B1        305 RCPECGAPMAASNVTNTLKDGTKkriRYYSCSVFrNkgasvCHANSIRAEQAETFV 360 Enterococcus faecium DO
jgi:Pnap_3319  36 TCPNCESPAYGFRKRQLSTLVTE---LAYECRNP-L-----CRASFVFQGEVTRWL 82  Polaromonas naphthalenivorans CJ2
WP_013316557   25 ECPECGSKAVIRKTNRKHRQIAD---IYCACADV-E-----CGYTFVMNLTFSHTL 71  Dickeya
Q15Y18          4 TCPNCQSKAVITSRDQQSIQVSN---LYCSCTNTkE-----CGHTFVSTLAFSHTL 51  Pseudoalteromonas atlantica T6c
Q2S7I7          4 NCAECGNKAIITSRQVLDPKLAN---LYCVCKNA-E-----CGHSFVMNLAFSHTL 50  Hahella chejuensis KCTC 2396
Q5HK52        301 HCPQCGAPMAASNTTNTLKDGTKkriRYYSCSNFrNkgskvCSANSVRADVIEDYV 356 Staphylococcus epidermidis RP62A
Q1QXU2         10 PCPHCGVNLRVRKSQGLTPVYRE---AVFECRNE-D-----CGWRGKASIEITHTI 56  Chromohalobacter salexigens DSM 3043
Q88FG4          7 vCPHCHSRMRIRTSEGRHIFLRI---AYLQCTTE-A-----CGWSVRAEFEMTHEl 53  Pseudomonas putida KT2440
Q6D9D8          9 ECPKCGAWMRARTSLALDANVRS---IYRICTGQ-E-----CGFKCTSLQWYEVAL 55  Pectobacterium atrosepticum
Q63LF7          7 ECPCCGGEIEARHTEAMSATLRR---LYFVCDD--------CGFRTPAGLEILFSL 51  Burkholderia pseudomallei
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