1I6H,6A5P


Conserved Protein Domain Family
RNA_pol_Rpb2_5

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pfam04567: RNA_pol_Rpb2_5 
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RNA polymerase Rpb2, domain 5
RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.
Statistics
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PSSM-Id: 398323
Aligned: 142 rows
Threshold Bit Score: 34.0545
Threshold Setting Gi: 124447565
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1I6H_B              681 WSSLLNE--GLVEYIDAEEEESILIAMQPEDLEPA-EANEENDldvdpa--------------------------krirv 731  baker's...
licsiro:TALC_01521  643 WDNLFHY--GVMEWVDAEEEEDALVLVTPYETPKRcPCCGHALsetdvdwmnpgkkgdcel---scrwcgdkftvpskle 717  Thermop...
AGI86361            653 WDDLFRD--GILEWLDAEEEEDSLVLVRPYNTPKRcPCCGHALsetdvdwmnpgkaekfcelsckwchdkfnvpsniige 730  Candida...
Q8TXI7              107 WKDLEEE--GVIEFLDAEEEENALIAQSLEEFYSMpKEER---------------------------------------- 144  Methano...
Q9J544              608 FSDIQKEypHVIEMLDLEQFVFSNVCESVSKFRELsDEDK---------------------------------------- 647  Fowlpox...
P33811              616 FSDIQKEfpHVIEMVDIEQFTFSNVCESVQKFRMMsKDER---------------------------------------- 655  Variola...
Q6TUQ3              617 FSDILKEfpNVVEMVDIEQFTFSNVCESVQKFKSLsKTER---------------------------------------- 656  Yaba mo...
Q9Q8I6              608 FSDVQREypHVIEMVDIEQFTFSNVCESVQKFRSLpKSEK---------------------------------------- 647  Myxoma ...
Q6TVL9              606 FSDVLREfpHVIEIVDVEQFSFSNVCDSVQRFRTLpPEER---------------------------------------- 645  Orf virus
Q98839              617 FSDIQREypHVLELVDVEQFTFSNVCESAARFRALpEAER---------------------------------------- 656  Mollusc...
1I6H_B              732 sHHAtTFTHCEIHP 745  baker's yeast
licsiro:TALC_01521  718 nSKV-PYTHLEVDP 730  Thermoplasmatales archaeon BRNA1
AGI86361            731 dGKS-EYTHMEVDP 743  Candidatus Methanomethylophilus alvus Mx1201
Q8TXI7              145 ---K-KYTHVELDP 154  Methanopyrus kandleri
Q9J544              648 ---K-LYDYCDF-P 656  Fowlpox virus strain NVSL
P33811              656 ---K-QYDLCDF-P 664  Variola virus human/India/Ind3/1967
Q6TUQ3              657 ---F-KYHLCDF-P 665  Yaba monkey tumor virus
Q9Q8I6              648 ---V-KYQLCDF-P 656  Myxoma virus
Q6TVL9              646 ---A-LFDFCDF-P 654  Orf virus
Q98839              657 ---R-LYDYVDF-P 665  Molluscum contagiosum virus subtype 1
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