6W2D,7FJ1,6PPB,8TEP


Conserved Protein Domain Family
Herpes_UL17

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pfam04559: Herpes_UL17 (This model is not part of the current CDD release)
Herpesvirus UL17 protein
UL17 protein is required for DNA cleavage and packaging in herpes viruses. It has been shown to associate with immature B-type capsids, and is required for the the localisation of capsids and capsid proteins to the intranuclear sites where viral DNA is cleaved and packaged. In the virion, UL17 is a component of the tegument, which is a protein layer surrounding the viral capsid.
Statistics
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PSSM-Id: 516313
Aligned: 40 rows
Threshold Bit Score: 245.039
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6W2D_v         1 MDVHIDNQVLSglG--TPLLVHLFVPDTVMAELCPNRvPNCEGAWCQTLFSDRTGL-TRVCRVFAARG-MLPGRPSh--- 73  Epstein-Barr vi...
Q8B3Z0         1 MDVHTNNWRYR--RphCELIIPTVIPEAVFYPYEWGSlSEVFEVKFQTIFYQTQTA-SKWTKMWARRL-SHTHSVGnl-- 74  Porcine lymphot...
Q8B3W1         1 MDVHINNWRYK--RayCDLIIHAVIPEDIFSPYEWTLnSNVFQVKFQTIFYQTQST-SRWVKMWARRL-NHEYRLGtl-- 74  Porcine lymphot...
3_pfamImport   1 MDVHSNNWRYL--RhrCHVMAHLVLPEDLFADLNMEGhPPVFRCVARTIDYDTDQV-TEPLPVWARYL-DHLHSVEnl-- 74 
O36381         1 MDVHTNNWRYF--HhgCDVMAHLVIPEDLIEGLYAEDrPKIFSCTLKVIDYQTNLV-SEPVIVWARSI-DHRHTVGtl-- 74  Alcelaphine her...
Q80BP5         1 MDVHFDNWRFL--SrpDKVIVHLLLPQTFFESHHIPF-DPNLTFWSQTRFHHLDFPpTRYVKIWGKLYfSLPGLPSka-- 75  Herpesvirus sai...
Q9YTN4         1 MDVHFDNWRFW--SrtDNAIIHLLLPQTFFELHNIPF-QPSLIFWTQTRFHNFDLPpTPYVKTWGKQYtSFPGLSTka-- 75  Ateline gammahe...
F5HB39         1 MDAHAINERYV--GprCHRLAHVVLPRTFLLHHAIPL-EPEIIFSTYTRFSRSPGS-SRRLVVCGKRV-LPGEENQlas- 74  Human herpesvir...
Q77NK0         1 MDAHGLNRRSV--AgqCDGLFHVILPRGFILANNITC-GERQRFFAHTWFAASGRT-SKTLYVWGRVF--QNTDPGrgdg 74  Rhesus monkey r...
6PPB_k         1 MDAHAINERYV--GprCHRLAHVVLPRTFLLHHAIPL-EPEIIFSTYTRFSRSPGS-SRRLVVCGKRV-LPGEENQlas- 74  Human herpesvir...
6W2D_v        74 -----RGTFTSVPVYCdegLpeLYNPFHVAALRFYDEGG-L-VGELQIYYLSLFEGAKRALTDGHLIREAsgvqesaaam 146 Epstein-Barr vi...
Q8B3Z0        75 ----tqGIATSFPIFLennI---WHPFNILIMKLSRPCG-A-IKFIRFFYLTIVNGYIKASS------------------ 127 Porcine lymphot...
Q8B3W1        75 ----skGVSTSFPIFLednI---WHPFNILVLKITNSAG-D-STFIKFFYLTIVSGYLHASR------------------ 127 Porcine lymphot...
3_pfamImport  75 ----trGVALSIPLFLtngM---WHPFNVVLLQCSPYPE-K-LYYIRIFYQTIFSGLLEAGAYSESAVEE---------- 135
O36381        75 ----tsGIALSIPLLLtndT---WHPFNIILLRFAETANhN-ACYVRFFYQTIFSGLIKAGA------------------ 128 Alcelaphine her...
Q80BP5        76 ----cpGIAVSLVINTeenM---YNPFDMTVLKILLNE--N-IYYIKFFHMELFFAHI---------------------- 123 Herpesvirus sai...
Q9YTN4        76 ----cpGIAVSLVVNTiksM---YNPFDMTVLKILHNE--N-TFYIKFFHMELFADPE---------------------- 123 Ateline gammahe...
F5HB39        75 ---spSGLALSLPLFShdgN---FHPFDISVLRISCPGSnL-SLTVRFLYLSLVVAMGAGRNNAR--------------- 132 Human herpesvir...
Q77NK0        75 psgpwsGLAISLPLFTtngK---FHPFDVVILKADTPDSgS-SWTVKFLYMSLIAAYRNAMRGLKD-------------- 136 Rhesus monkey r...
6PPB_k        75 ---spSGLALSLPLFShd---gNFHPFDISVLRISCPGS-NlSLTVRFLYLSLVVAM----------------------- 124 Human herpesvir...
6W2D_v       147 qpipidpgppgGAGIEHMPVAAAQVEHPKTYDLK--QILLEITQEENRGEQRLGHA--GSpalCLGLRLRAGAeTKAAAE 222 Epstein-Barr vi...
Q8B3Z0       128 -------------------LPETDSSRQEINQEQ--DIFSEILKDTQQTTYRHDA---KS---ILNLLLQSTK-----PM 175 Porcine lymphot...
Q8B3W1       128 -------------------SPELSVEVPTQSHKE--DVFHDILSETREASFRHDP---KS---VLNNLLEIKE------- 173 Porcine lymphot...
3_pfamImport 136 -------------------LPQIPSSQPTKPVE---DPLRSILRGPKRAQHN------SR---TINNNDSVGI-QAPEYA 183
O36381       129 -------------------PPVEEVNHPPVELPPreDPLVNILQGRSGRQFPAT----EE---STNDHTASQK-LVIGEA 181 Alcelaphine her...
Q80BP5       124 -------------------APNSLKDTSIEEPFKnvDHIDAILNTTSPVTNLYKNP--LG---VLANLLQSRP------- 172 Herpesvirus sai...
Q9YTN4       124 -------------------VPHYSEDIPKEPSFKdiDPIDAILSTTTHTTNTYQNP--LG---VLTSLLQRRP------- 172 Ateline gammahe...
F5HB39       133 -------------------SPTVDGVSPPEGAVA--HPLEELQRLARATPDPALTRgpLQ---VLTGLLRAGS------D 182 Human herpesvir...
Q77NK0       137 -------------------KVSQCTDAAVDGEVHplTVLKEALVSPDTATRPVSACnpLQ---MLTGLLQSRV------R 188 Rhesus monkey r...
6PPB_k       125 -----------GAGRNNARSPTVDGVSPPEGAVA--HPLEELQRLARATPDPAPTRgpLQ---VLTGLLR------AGSD 182 Human herpesvir...
6W2D_v       223 TSVSKHHPALENPSNIrgsagGEGGGGR-----AGTGGTVGVGSGALSRVPVSFSKTRRAIRE--SRALVRGIAHIFSPH 295 Epstein-Barr vi...
Q8B3Z0       176 ECRHLSHYALESTSDL-----RGQMR-------KVEHHNKDRIPKTAYPQALPMIRFGNVFTN--ESLVSIPTLHCFTRN 241 Porcine lymphot...
Q8B3W1       174 THRPMSHQALENSIDL-----RGRMI-------KVKERNKDHCKNANTVTNVPALQFSNVFTD--ESLVSITVLHCFTGN 239 Porcine lymphot...
3_pfamImport 184 VNYSLNHCALENSPSL-----RGALEAAtvglpVLGLKKPHRLPEGPFKHERPLSSRRVAVDFtaEDLVLQPLTHCFTKK 258
O36381       182 ASAYLNHRALERSPSL-----RGALAGEifsssGASNLSGSVPPANRQARRTALVNLVGTKDFtkDMLRLLPLTHCLSGK 256 Alcelaphine her...
Q80BP5       173 QSSPRHHFALEDPGKV-----RGY---------------EQPSLLQTDKAMPKVSYVKHQWSIlnSEPTVTRVKHIFTKK 232 Herpesvirus sai...
Q9YTN4       173 QSFPTHHFALEDPGQI-----RGY---------------KQTSIPSANKARPSVSYVKHQWWNitTEPVIKCIQHVLTKK 232 Ateline gammahe...
F5HB39       183 GDRATHHMALEAPGTV-----RGESLDP-----PVSQKGPARTRHRPPPVRLSFNPVNADV-----PATWRDATNVYSGA 247 Human herpesvir...
Q77NK0       189 DDYVTHHRALERPGNV-----RGQ---------VIAPTRTEMPNGSPSRVRLGFRPPKQAN----YPKTWAQARHVFSSR 250 Rhesus monkey r...
6PPB_k       183 GDRATHHMALEAPGTV-----RGESLDP-----PVSQKGPARTRHRPPPVRLSFNPVNADV-----PATWRDATNVYSGA 247 Human herpesvir...
6W2D_v       296 ALYVVTYPELSAQGRLHRMTAVTHASPATDLAEVSILGAPEREFRFLISVALRISASFREKLAMQAWTAQQEIPVVI-PT 374 Epstein-Barr vi...
Q8B3Z0       242 RIWICSYDK-CDLGLVSYLDMISE----QQLKAIDPLLLVKAEADCFYRWVWSFVQSLEKECEDKRYGFAQNIPIFI-EN 315 Porcine lymphot...
Q8B3W1       240 RIWICAYEK-CKQALVSQLDMLSE----NELNTIDPLLIVKAEADYFYKLAWSFIASVERECEHVGYNLAQNIPLFI-EK 313 Porcine lymphot...
3_pfamImport 259 KLWLCVYESSSENRPVSYLDSLSE----EALRNINPLRVIQREAAFLAAKMGQFVDSLITECKKTGFTVNQQLPISIeSG 334
O36381       257 RFWLCMYNPEGYKNLVSCLNHLSE----DELKKINPLSIIQQDTSFLTLKMNQFVDSLLEECRAANFRMQQVLGVAIrSD 332 Alcelaphine her...
Q80BP5       233 SYFICSYPTMNNPQCTSVLETISV----QELAHVSPTAVLDTEKAFLFKHQHRFINTLEHVCKSKNYAIEQHVPVLI-QK 307 Herpesvirus sai...
Q9YTN4       233 SYFICYYSTMSNMRYTSVLETIPI----QELTHVNPTAILDSEKAFLFKHQHRFVNLLEHVCKSKNYTVKQHIPVLI-HG 307 Ateline gammahe...
F5HB39       248 PYYVCVYER----GGRQEDDWLPIPLSFPEEPVPPPPGLVFMDDLFINTKQCDFVDTLEAACRTQGYTLRQRVPVAI-PR 322 Human herpesvir...
Q77NK0       251 AYYVCVYDNEELDTKWQRQDPRPLPLDW-----SDPVAYLLEGDLFLGAKQNAFVDSIEKTCRCQNYTIKQFFPVLI-NR 324 Rhesus monkey r...
6PPB_k       248 PYYVCVYE----RGGRQEDDWLPIPLSFPEEPVPPPPSLVFMDDLFINTKQCDFVDTLEAACRTQGYTLRQRVPVAI-PR 322 Human herpesvir...
6W2D_v       375 SYSRIYKNSDLIREAFFTVQTRVSWESCWVKATISnAPKTPDACLWIDSHPLYEEGASAwGKVIDSRPPGGLVG------ 448 Epstein-Barr vi...
Q8B3Z0       316 TSHTLGAVADHFYEACVTITGLYNENSGLIKAALS-RMNHQEDY-WLDVIGVWEQRHSHwGIRLKLK-CEKIEGkdisld 392 Porcine lymphot...
Q8B3W1       314 SSHVLNDISAHFYEACVTIISLYNENSGLIKAALA-RLSHQEGY-WLDVIGLWERHRSHwGIRLNLK-PGKTAAkdinie 390 Porcine lymphot...
3_pfamImport 335 AANALDYIQEQFYEACFTIRGLTNETSGWIQAALA-QAXGKPGL-WADIVSLWERGAGTwGLRLNHKFSLPPTGalinie 412
O36381       333 ASNALEYVQEQFYEACFTLRCATNENSGWVKAAVA-TQSRKQGV-WLDVISLWDQGVGSwGVSLKLPNPLPGLHtlaciq 410 Alcelaphine her...
Q80BP5       308 DEETASSIKDHFTETCFVLESTVSEASAWVRATFA-KYLNKPKAFWIDYIRLWEEGAHTlGKSVPELKEDVCEEkmwh-- 384 Herpesvirus sai...
Q9YTN4       308 DEDTTSSIKDHFIESCFVLESTVSEASAWVRATFA-KYLNKPKRFWIDYLRLWEEGTHLlGKFLPELEENVCEErmwn-- 384 Ateline gammahe...
F5HB39       323 DAEIADAVKSHFLEACLVLRGLASEASAWIRAATS-PPLGRHAC-WMDVLGLWESRPHTlGLELRGVNCGGTDGdwl--- 397 Human herpesvir...
Q77NK0       325 DNETVDLIKEHFIEACFVIRNQVSERSAWVKAALF-RNDSNT--YWKDVLGLWEHGPHKlGTAIKLPTSEPCNAdvnw-- 399 Rhesus monkey r...
6PPB_k       323 DAEIADAVKSHFLEACLVLRGLASEASAWIRAATS-PPLGRHAC-WMDVLGLWESRPHTlGLELRGVNCG---Gtdgd-- 395 Human herpesvir...
6W2D_v       449 --------AASQLVALGTDGHC-VHLATTSDGQAFLVLPGGFVIKGQLAL 489 Epstein-Barr virus (strain B95-8)
Q8B3Z0       393 s-liccteGDEEFVESLSSSHScVGILYSSSLVSWLILPGGFAIKGYFDL 441 Porcine lymphotropic herpesvirus 3
Q8B3W1       391 s-iicrimGHEDLVESLITCAGfVGLLYTSSLVSWLILPGGFAIKGYFDL 439 Porcine lymphotropic herpesvirus 2
3_pfamImport 413 nlscqltgPHADFLEQACTRDGqVVVVYSSTAEAWLILPGGFAIKGHIHH 462
O36381       411 qlscqlegKHKYLLESVCAKDDqIAVLHSHTLNAWLLLPGGFAIKGKFTH 460 Alcelaphine herpesvirus 1 strain C500
Q80BP5       385 -----llsLNKEFIHCIRNQGC-TGVLVDSNLNAWLILPGGFVIKGHYNI 428 Herpesvirus saimiri
Q9YTN4       385 -----ilsLNKDFINCLEGQGC-TCVLVDSDLNAWLILPGGFVIKGQYNL 428 Ateline gammaherpesvirus 3
F5HB39       398 ------eilKQPDVQKTVSGSLvACVIVTPALEAWLVLPGGFAIKGRYRA 441 Human herpesvirus 8 strain GK18
Q77NK0       400 -----swlLCDEDITRSISGQStVCLVVSPTLTAWLVLPGGFVIKGRYDL 444 Rhesus monkey rhadinovirus H26-95
6PPB_k       396 ----wleiLKQPDVQKTVSGSLvaCVIVTPALEAWLVLPGGFAIKGRYRA 441 Human herpesvirus 8 strain GK18
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