1SIG


Conserved Protein Domain Family
Sigma70_ner

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pfam04546: Sigma70_ner 
Sigma-70, non-essential region
The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function.
Statistics
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PSSM-Id: 398305
Aligned: 188 rows
Threshold Bit Score: 58.7166
Threshold Setting Gi: 123723232
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1SIG_A               29 PEAITYLLEQYNRVEAEearlsdlitgfvdpnaeedlaptathvgselsqedldddedEDEE----DgdddSADDDNSID 104
WP_009550948        294 PTTINEILSMAQKIAGGqmqiseavdgfvsddea--------ddyvaeedfdefdeedDDDGqggsK----ALTKKLEEL 361 Burkhold...
WP_011830079        278 PTTIAEILVLADKIRVGemqiseavdgfvsneea--------ddyvaeedfdefdeedDDDGnggsK----ALTKKLEEL 345 Methylib...
BAL96045            263 PTTIAEILAMADKIAAGemqisevvdgfvsddea--------ddyvaeedfdefdeddDDDGaggsK----ALTKKLEEL 330 Rubriviv...
WP_011801005        268 PATIAEIMRLADDIREGkvvistvvdgfsnpnea--------ddyvaeedfdefdeddDDDGkggsK----ALTKKLEEL 335 Polaromo...
UCNUF:Cenrod_1117   401 PASIAEILQLGEDIRANkvvitsiidgftnpnea--------ddyvaeedydefdleeDDDgg--tK----ALTKKLEEL 466 Candidat...
BoseInst:TKWG_13360 351 PTTIQEILNHIQRVRDGqaqideivdglvte-------------dgeeyagsgvqeedESDDgpagG----MSSKQLEML 413 Advenell...
zhongguo:PT7_1385   285 PTTVNEILQYIQRVRDGaaqidevvdglidqe------------geeyagagvsvdndENEDgpagG----MSSKQLEHL 348 Pusillim...
WP_043681948        270 PTTVNEILEHVRRVREGsaqidevvdglidee---------------gedyagsgvasdedDgpagG----MSSKQLEYL 330 Castella...
CAP42375            341 PTTINEILAHITRVREGqaqidevvdglvdpe-----------dgeeyagagvaadedENDDgpagG----MSSKQLEDL 405 Bordetel...
1SIG_A              105 PELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLcVE 184
WP_009550948        362 KSHALVKFAALALHFEKMSKAYAKEGYRSPAYDKAQHAISDELMTIRFTVKTIERLCDILRSQVDDVRRFEREIRKIvVD 441 Burkhold...
WP_011830079        346 KTQALVRFDELRTHFDRMRKAYEKEGYKSPAYNRAQMGVSSEIMSLRFTVKTIERLCQILRSQVDDIRRYERELRKIvVD 425 Methylib...
BAL96045            331 KKQALEKFDLLRSHFDRMRKAYEKDGYKSPAYNKAQESISDDLMTIRFTVKTIEKLCQILRAQVDDVRRYEREIRKIvVD 410 Rubriviv...
WP_011801005        336 KKEALSRFEKVGEYAEKVKKLYEKEGYGGPTYLKTQKALSDELMTVRFTAKTIEKLCDLLRGQVLDVRKKERELRRIiVE 415 Polaromo...
UCNUF:Cenrod_1117   467 RAEALVRFDRLRAQHEQLGAIHAEQGYGTPDYVRVQKTLSEELMSVRFTARCIEKLCDMVRAQVEKIRQKERELRKIiVD 546 Candidat...
BoseInst:TKWG_13360 414 RQQALEKFDSVEKWFGKMRTVYEQGGYRTPDYIRAQEAILEELMGVRFTAKMVERLADTLRNQVEEVRQLERAILHTcVD 493 Advenell...
zhongguo:PT7_1385   349 RTKSLKKFENISVWFSKMRTAFERDGYQAQEYAEAQEAILNELMGVRFTAKMVEKLADTLREQVAQVRKLERTVLHTcVD 428 Pusillim...
WP_043681948        331 RTKALKIFDEVEVWFDRMRQAFEAEGYRSAAYVQAREAIHAQLMGVRFTAKMVERLADALRAQVAEVRAQERAAMAIcVT 410 Castella...
CAP42375            406 RVKALAKFDEVTKQFEKMRQSYERDGYKSEAYIKAQEAILNELMGIRFTAKMVEKLADTLRSQVEEVRQLERAVLHTcVD 485 Bordetel...
1SIG_A              185 QCKMPKKNFITLF----------TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 238
WP_009550948        442 RCGMPQEHFIKTF----------PPNVLNLKWAEKEIAAAKAYSAIMSRNLPAIQELQQKLIDL 495 Burkholderiales bacteriu...
WP_011830079        426 KCGMPQDHFIKTF----------PPNSLNLKWAEKEIAANKSYSAVMARNLPPIQDLQQKLIDL 479 Methylibium petroleiphilum
BAL96045            411 KCGMPQEQFIKTF----------PPNVLNLKWAEKEAAAGKPYSAVLGRNLPAVQELQQKLIDL 464 Rubrivivax gelatinosus I...
WP_011801005        416 KCGMPQEVFIKDF----------PPNLLNLKWVEKQVAAGKPWSNVMARNIPPIQELQTKLGEL 469 Polaromonas naphthaleniv...
UCNUF:Cenrod_1117   547 RCGYPHTAFIAEFsgrdrhhhrvPSHLLDKQWIERQAAAGKPWSASLARHIPPVQELQQALIDL 610 Candidatus Symbiobacter ...
BoseInst:TKWG_13360 494 RVGMPRSYFIKVF----------PGQETNLNWVQDEVNKNAAYAETLERSIPDIHEIQQKLIDL 547 Advenella kashmirensis W...
zhongguo:PT7_1385   429 RAGMPRAYFIKVF----------PGNETNLNWVLEEVAAGHPYSETLERHIPAVQEIQQKLIDL 482 Pusillimonas sp. T7-7
WP_043681948        411 RAGMPRNHFIKAF----------PGNETNLGWVDEEVAAGHDYSETLARHAPAIQEIQQKLIEL 464 Castellaniella defragrans
CAP42375            486 RAGMPRSHFIKVF----------PGNETNLDWVLQEVAAGHPYAETLERQIPAVQELQQKLIDL 539 Bordetella petrii
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