Conserved Protein Domain Family
Sigma70_ner

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pfam04546: Sigma70_ner (This model is not part of the current CDD release)
Sigma-70, non-essential region
The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function.
Statistics
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PSSM-Id: 516305
Aligned: 139 rows
Threshold Bit Score: 74.9873
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2RQB6              161 PLTIRALLQWHDALVDGRMLLRDIID---------LDatygsgagpdvvaegledsvvplsplalspaRALPKeadeaeE 231 Rhodospi...
jgi:HIMB59_00009520 178 PASIDILKKWIDQVKLQEINLREIVD---------FDeyfneendpys---------nsskrkeiqkiINDKKkallkeK 239
wsu_vmp:AMF_363     165 plvlRTFMSWRDDLVNQQVMLRDLID---------LDanyrg----------------------gaprQEFEEggeygeQ 213
WP_013951488        145 PLAVRSIIKWYEDLTHDVISLRNIID---------LDar-------------------------------ysGefqkhdF 184 Candidat...
EDV18456             98 PMALKKMQDWYDDILTGKKLLREVID---------IDatasn--------------------------------eqffdE 136
WP_013695383        125 PVTAKKIFEWEERLINNEMLVRDIID---------LDtnfld---------------------ddklkKSIKEkkekeeK 174 Candidat...
Q4FPR1              114 PITAQQFVEWDEKLQSDEILVREIID---------IDtnym-----------------------------------edeN 149 Candidat...
Q2INW6              309 siAIREILELGERLRKGKIRVREIIKda---------------------------------------gDEQQAeqeepeE 349 Anaeromy...
WP_236578847        312 PIAVEEILRLGEALKDENTAVDTVVDg-------fND------------------------------------------- 341 Sutterel...
Q1LEA3              137 PLVVYELLTMADEIERGEMAVDDLIDhwdevpaaaVN------------------------------------------- 173 Cupriavi...
Q2RQB6              232 AvtpGRDDDsededegd----dakpadgAGDEeaapsgedegdgsenNVSLAAMEQELMPRVLETFEHIATTYGKLKKaq 307 Rhodospi...
jgi:HIMB59_00009520 240 Q---QLMKEqgieidke----kleetasEEDVen------------eSFSISIIEEFYKPEILKKLDRVLVLSENITKik 300
wsu_vmp:AMF_363     214 E---MAEPGdsdvggdg----addedegEDSSa-------------gNASILEMESALLPKVISILDATIESAEKILEm- 272
WP_013951488        185 S---STETEenekfdtn----eegaeeaEEDGf-------------eNASILRMESELRPKVIESLSKAFELGEEILKlq 244 Candidat...
EDV18456            137 N---SEKTDdfntknte----sgnddfdNDDDs-------------dSTSISAIENDLKPKILDILLKISENCKSLLQly 196
WP_013695383        175 L---KKKESkekgeetn----tttadivDDDDe-------------fNISLASLEIELKPKILKTFENISKNYRKLIAyq 234 Candidat...
Q4FPR1              150 T---GPSAKqrnsgetd----kneenngDDDEf--------------NPTLAAMETEIKPKVLKTVNTLTKEYAKLIKyq 208 Candidat...
Q2INW6              350 E---LDEAVeaaegqge----aeaeagaEGDGaa------------aAEGAEPEKPRIPKEEERKVEHVLKHIDRIRKle 410 Anaeromy...
WP_236578847        342 ----AAAEEnanssade-----------------------iatdigaAAMTVDQLAEMRARVLSLFELARKSLDRVRE-- 392 Sutterel...
Q1LEA3              174 ----VPAIEmseavqdddpapgaagvdlEETDpv-----------stGASTARSSAALESEVIARLAIVRARFLDWSR-- 236 Cupriavi...
Q2RQB6              308 dqr---iaalQKGEEpGAaLERKYDKLKLEL----VGLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLRL-AERAKI 379 Rhodospi...
jgi:HIMB59_00009520 301 k-------nkNITKIsDTkSLKDLKKFQDEI----LNYFNEIKIKPHKLEEIIAHLYSINKEIQSKEVSILSI-ATQSKI 368
wsu_vmp:AMF_363     273 ---------kKQKRDsGKyDKKAYNALHENI----WELVSQMKLSDPAVLSVTQQIYNLSKAIAAEEAALMSL-VESYGV 338
WP_013951488        245 qek---lalaLKGAKpDRaQQDNYENLISQL----SDVMLELKLNESNIEKLLEELYEANKNLIKLEMNFLKL-AMECGI 316 Candidat...
EDV18456            197 dik---kdkkISSPNqSKtEKKLLDNKINDI----ANLLGELKLNDQFINEIFYQLKEINKDIIQIESELFKL-ASNSKL 268
WP_013695383        235 ees---lqciLSSQKfSDsKKKNYEKIKKEI----MEEMLGLQFNQVTQEDLVALNYNENKKAINLDGDLMRA-ALKYGI 306 Candidat...
Q4FPR1              209 kek---ldciLNAVSfSAaKEKGHDKIVSDI----LENIKSLQLSPSVLEELVQKHYVENKKIVSLEGNLLRL-AMDQKI 280 Candidat...
Q2INW6              411 rdvakvretlQGGKKlSEvKRKELKGEVRAIeaemMENLEAIQLNKKQIDRIVLRLKSFIKRVEEAEREFFDC-ERRTGV 489 Anaeromy...
WP_236578847        393 ----------TYGDPk---REKEYRKALADM----SAALSPIRFSVKLVTQMTDHISQHMDEVNNTLKKMRATlANQCRM 455 Sutterel...
Q1LEA3              237 -------------QSrQQaATSDAFVALNAI----RAELAVYHFSAAAVARLGQVLSTHIAAIQQAERRIAGIvIDRCGI 299 Cupriavi...
Q2RQB6              380 RRDEFLDHY-FGREMDPSWREDVAAlPG-KGWRDFTTRFADEIKDIRGSIAEI 430 Rhodospirillum rubrum ATCC 11170
jgi:HIMB59_00009520 369 ARDIFLKHH-SLKDTYTLYQKHMCS-SD-ESFKAMFQKNAEKLKTIYKEILSl 418
wsu_vmp:AMF_363     339 DRKSFLEAY----NNNTVFEQANAS----PEWKNLLEKEKKTLTDIQNKVRll 383
WP_013951488        317 DRNIFLKDY-LGNELNPNWIEKISQ--N-PKYSKFIENGK--VEELRQQLRQV 363 Candidatus Midichloria mitochondrii
EDV18456            269 NRTKFIDVY-RTIDLEKNWIDLLKN-RG-VKYTKLVDENSSFFTKSQLKFEKi 318
WP_013695383        307 SRDDFIKFY-VGNELNPNFESFLSG--D-KNWSKFFKNEQKLFKISREKLTDL 355 Candidatus Pelagibacter sp. IMCC9063
Q4FPR1              281 PRNEFIKFY-IGNEINPNLKKFLDT--N-PMWKQFFSKNKDEFKNIRERLIEI 329 Candidatus Pelagibacter ubique HTCC...
Q2INW6              490 PVKDLRRLL-RETREDEAERKKLAK-KL-RCALDEVEELDRTLRSAGRKILRV 539 Anaeromyxobacter dehalogenans 2CP-C
WP_236578847        456 PQVQVVELLkSDGVTDPECFEKISA-AG-KPWSDAVSHSMAVLKEEQAVLISA 506 Sutterella wadsworthensis
Q1LEA3              300 AREQFLQTF-PGHEIDLGWSEALAA-ERiSGAADALVRAIPEIQAIQREMRVL 350 Cupriavidus metallidurans CH34
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