Conserved Protein Domain Family
GeBP-like_DBD
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pfam04504: GeBP-like_DBD (This model is not part of the current CDD release)
Glabrous-enhancer-binding protein-like family, DBD domain
This entry represents the DNA binding domain (DBD) present in GLABROUS1 enhancer-binding protein (GeBP) and GeBP-like proteins, such us storekeeper and storekeeper-like (STKL) transcription factors. GeBP and GeBP-like proteins play a redundant role in cytokinin hormone pathway regulation. Storekeeper was identified as a B-box motif binding factor that regulates expression of patatin, a storage protein in potato. Storekeeper-like transcription factors STKL1 and STKL2 function as transcription factors in the glucose signalling pathway. The overall predicted structure of this DNA binding domain (DBD) reveals a bundle of four helices, with helices alpha1 to alpha3 making up a single myb-type helix-turn-helix (HTH) domain.
Links
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Statistics
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PSSM-Id: 516284
Aligned: 66 rows
Threshold Bit Score: 70.7514
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
XP_004230126  93 QRLWTDEDEIELLRGFLDyTTQRGLNtssPQhhYDTTAFYEQIKSKFQLDFNK--NQLVEKLRRLKKKYRTVVSKMG-SG 169
XP_002466354  71 QRSWPDSDEIALLEAVAShRKKHGRL-------PSPDELAAALRGRIFSEERLtaEQVAKRLLALRTRYGNAAIR---LK 140
XP_006648578 200 atRWARADEIKILEILVAhFKNHGTQ-------LSTDGIIGAAGDNLD-RKNIkhRNMYKKVGRLKQRYEATAKKF--ET 269
XP_006664826 189 RTLWTTADAIKILEIHVAhLKNHGTL-------PNADEIIGAAGDNLD-RKNItkTGIYEKVRSLKKRYAATTKKF--EE 258
RCV08542     145 QRTWSTDDEVRILEALAAhRREHGTL-------PQVDALAATLAGTLD-NSGSsiALLQGKLKSLKRRYSLAANK----- 211
XP_006665059 118 QRIWSTEDEVRILEALAAhREEHGAL-------PQGDALAASLAGILD-KPGCdrRGLQGKISTLKRRYKAIAKK----- 184
4_pfamImport   2 QRSWSTEDEVRILEALAAhREEHGAL-------PHVDALVASLAGIFD-KAGCdrRGLQVKIGFLKRRYEAIAQK----- 68 
XP_003574606 180 PRVWSPQDEITILRSLISyRAKKGVL---PAsnQETGKLHDQIRGKLNAEAST--TQLTDKIRRLKHKFRLLVDR-AkEG 253
Q0J1B9        33 SRVWSQADELVILRGLITyRTKRGVL---PGstQDIGKLHSYIRGQLSAKVST--TQLSDKVRRLKQKYQMLATR-AkTG 106 Japanese rice
XP_003578208 196 SRLWSPGDELVILRGLATyRAKSGVL---PGstNDIGKLHRHIRGQLSVKVST--TQLSDKVRRLKQKYQVLVTR-AkNG 269

XP_004230126 170 KDFVFKSAHDQVTFDISNRIWS 191
XP_002466354 141 RGIIPAKDSDLTIYRLSKLIWA 162
XP_006648578 270 SGNLPYKEDDLRMYQLSSEIWG 291
XP_006664826 259 SGNLPDEEDDLRMYQLSSEIWG 280
RCV08542     212 -GERPSKDHDRRLFDLSKSVWG 232
XP_006665059 185 GGELPSKGDDRLLFDLSKRIWG 206
4_pfamImport  69 -GESPGKGHDRRLFDLSQRIWG 89 
XP_003574606 254 REPELPTTHDRDLYELGKKVWG 275
Q0J1B9       107 KEV-FPTPHDHNIYQLAKKVWG 127 Japanese rice
XP_003578208 270 RDQDFPTPHDHSIYEHAKKVWG 291
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