8OUE,8OUE,3U28,3UAI,2V3M


Conserved Protein Domain Family
Gar1

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pfam04410: Gar1 (This model is not part of the current CDD release)
Gar1/Naf1 RNA binding region
Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth, and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting, and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans, Gar1 is also component of telomerase in vivo. Naf1 is an essential protein that plays a role in ribosome biogenesis, modification of spliceosomal small nuclear RNAs and telomere synthesis, and is homologous to Gar1.
Statistics
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PSSM-Id: 516226
Aligned: 195 rows
Threshold Bit Score: 39.7875
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8OUE_D        70 VVLLGEFLHPCEDDIVCKc-TTDeNK-VPYFNAPVYL-ENKEQIGKVDEIFGQLRDFYFSVKLSENMK---ASsf--kkL 141 human
EDS28094     301 CKPVGHVQSIVAQIVIVQs--yAgVE-LLNLDTVLFLeKGKRPLGKIFDVIGQVAAPMYCVLFNSRQe--vISkgi-tvG 374
EDW29299     291 CIELGKVHSIVDQLVLVSv--iPnSM-LFDLDTVLFLeKGRKVLGEVFDVLGQVSDPLYCVRFNTNQq--iQErgi-kiG 364
EGI68144     338 CNPLGKIEKIVEQLVIVKpn---pGEvTLNLDTVLFVnKGTKALGKIFDVFGSVNEPYYCVRFNNAKh--iQDndv-kvG 411
EFN83891      31 CDLFGEIIGIVEELVIIKp--rAeKP-ALREETVLFIeQGQKTLGKIFDIFGPVKEPHYTIRFNNVEh--iQErqi-tvG 104
EFN69795      52 CELLGEVDKIVEQLVIVKp--kSnKP-ALHIETVLFMeKGGRALGKILDVFGPVSEPNYCIRFNSSEh--iQEnni-kvG 125
XP_032518774 164 TIKIGKIASIVDRLVIVRa--fEaTP-AVDLDSVLFLdNGAKALGKVFDVFGPVTEPHYCVRFNSLEh--vRErgv-vtG 237
3_pfamImport   1 CTKIGKIASIVDRLVIVQa--fPeTP-AVDIESVLFVeNGAKALGKVFDVFGPITEPHYCVRFNSLDh--vKErgv-qtG 74 
Q587F8       201 VTTVSSGNSNNSWCMVVAdsVPGi--fVLDCGTRVCL-PDGAVVGVVTAVMGPVNACVYAILCNGDVFsrlHAsgrleaG 277 Trypanosoma brucei
XP_002905256 136 IAQFGNILNVSAPGLMMTikSNPnTK-PLNEGSVLCL-EDRTVIGCVDEVFGPVLMPMYLIRFENAAk--mPEra--tvN 209
8OUE_D       142 QKFYIDPykLLPLQRFL 158 human
EDS28094     375 TPVYCAPq--TEHTQFI 389
EDW29299     365 DVVYCAPk--TEHTQFV 379
EGI68144     412 MQVYYCPn--SEYTSLV 426
EFN83891     105 TPVYYCPd--SCYTFFV 119
EFN69795     126 MPVYYCPn--TQYTSLI 140
XP_032518774 238 ADVYIAPr--SAHTSYV 252
3_pfamImport  75 MEVFIAPk--SQHTNYV 89 
Q587F8       278 TGLHY----DLGAQHII 290 Trypanosoma brucei
XP_002905256 210 TVVYY----ATEHTTYI 222
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