5MQF,6H57


Conserved Protein Domain Family
HA2_N

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pfam04408: HA2_N (This model is not part of the current CDD release)
Helicase associated domain (HA2), winged-helix
The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Statistics
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PSSM-Id: 516225
Aligned: 344 rows
Threshold Bit Score: 24.8992
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MQF_q         955 AMEQLYTLGAL---DDE-GLLTRLGRRMAEFPL 983  human
Q869Z1        1133 AINLLIDLGALn-aNQ---ELTPLGLQLSFIPV 1161 Dictyostelium discoideum
XP_003290744  1069 AINLLIDLGALs-sQQ---DLTPLGLRLSFIPV 1097
XP_008198757   698 AIENLECLGALd-kEE---RLTPLGEYLSQLTI 726 
32_pfamImport    1 ATRNLVQLGAVtqrDDAsYELTAEGLKLVKLGI 33  
12_pfamImport    1 AIRNLLQLGAVtltNDF-YDLTEEGRCLVKLGI 32  
XP_003552808   658 AIRNLIQLGAIelnNDV-HDLTSEGWCLVRMGI 689 
P0CE10         694 AIQNLVQLGAVvekNGV-LELTQEGHCLVKLGL 725  thale cress
XP_011627557   627 AIQNLIQLGAVifrGDV-LELTDCGHQLVKLGI 658 
XP_048231754   649 AIRNLVQLGAVtckNGT-FELTMDGHYLVKLGI 680 
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