3D6W,4CBV


Conserved Protein Domain Family
LytTR

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pfam04397: LytTR 
LytTr DNA-binding domain
This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.
Statistics
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PSSM-Id: 398205
Aligned: 95 rows
Threshold Bit Score: 65.6901
Threshold Setting Gi: 122448233
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3D6W_A          11 DGwIPVPFSKVXYL---EA-KDKKTYVNAEELTGTHKYSLQEFEYLLpkDSFIRCHRSFIVNVNHIKAIYPDthsTFLLS 86 
tigr:GBAA_3008 148 NAtVRVPFYEVEYV---MTdEPHRLALVTLDRIVYFYGTLKEIEIID--ERLFRCHQSYIVNTKQMSSYDAK---QKMIV 219 Bacillus anth...
Q833V4         149 ASsIKMDINDIYFF---QTeYDHRVSMVGKNFKREFYGTLSKIEQLH--PDLIRVHQSIIINKKYASKLNYK---THLLT 220 Enterococcus ...
Q1WQY2         163 rRiINENINDILYIi-tTP-KSHRLKIVTVNGMGEFTGDIKKLEAEN--DFLEKISQSCLANPSNIVEINLS---TRVIS 235 Lactobacillus...
Q97MW0         149 DRiINIEFQKILFFe-tSF-TIHKVVLHSVNRQIEFYAKMKDIEGELd-DSFYRCHKSYIVNKKNIKEININ---KRRIY 222 Clostridium a...
Q38Y65         150 pRfFSLPLKEVVYLyteKE-NPGHINLLAVTRKVTFPGNLNALEAQY--PMLFRCDKSYLVNLSNIANYDSK---TRSLS 223 Lactobacillus...
CCC77924       150 tRfFSVPINDVIMLstnKE-RPGSIRLTAKNKVADFPGNLNSFENKY--SQFFRCDKSSLVNIDYVDSYDYQ---KKELT 223 Lactobacillus...
Q88ZC3         150 tRyFSLALDDVILLstsKL-RPGSVQLHAINKVAEFPGNLNALEEKY--PQFFRCDKSSLVNLNHLRSFDYK---EKELL 223 Lactobacillus...
Q896P8         136 GNiKKILISSIKYL---EI-SNRKVIIHTDSGNYISTYKLKYWNEKLssFSFANPHSSFLVNMNYVMEMD-----REKVT 206 Clostridium t...
Q97IQ9         135 SKsTKVFLRDITYI---EA-EKRKIKIHTTYDVIEYYNKISQLEEELreYNFFRCHKSYIVNLGYVKSYD-----NTSIT 205 Clostridium a...
3D6W_A          87 XDNGERVPVSQSYASYFRKLLG 108
tigr:GBAA_3008 220 LKSGKRIPVSRRLVSKVRNMLK 241 Bacillus anthracis str. 'Ames Ancestor'
Q833V4         221 MRDGTEVPVSRRYYTQVKALFL 242 Enterococcus faecalis
Q1WQY2         236 FKDGYKETFPRRSKAKMKSLIe 257 Lactobacillus salivarius UCC118
Q97MW0         223 MINGEECLISTRMLKGL---IK 241 Clostridium acetobutylicum
Q38Y65         224 FIDGSEAKVSFRKSRELVAKLk 245 Lactobacillus sakei subsp. sakei 23K
CCC77924       224 MIDNIKCSVSYRKSRELNKILK 245 Lactobacillus plantarum WCFS1
Q88ZC3         224 LDGEIRCKASFRKSRELNKLLr 245 Lactobacillus plantarum
Q896P8         207 LLDGEYIYFSQRKFKDFKEKFI 228 Clostridium tetani
Q97IQ9         206 LENNDKIYISKYRLNDFLKTFM 227 Clostridium acetobutylicum
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