Conserved Protein Domain Family
DNA_pol3_chi

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pfam04364: DNA_pol3_chi (This model is not part of the current CDD release)
DNA polymerase III chi subunit, HolC
The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.
Statistics
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PSSM-Id: 516198
Aligned: 163 rows
Threshold Bit Score: 78.7871
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2SKR1         1 MPKADFHLLssgDIAQRDFYLCRLCEKIYRLGHRIYILCKDSKELEHLDDLLYSFRPESFIPH----SIEPEPPSsDI-- 74  Hahella chejuen...
WP_011747243   1 MGSALFYHL---TRSGPAQLLPMLIGKSLQAGWRVELRGRDRARQVALDEALWLR--EGFLPH----GLAGGPHD-ARq- 69  Paracoccus deni...
WP_020949485   1 MGAALFYHL---TRSAPEVLLPVLIGKSLHAGWRVELRGAHLPALERLDESLWLG--DGFLPH----GLAGGPHD-SLq- 69  Paracoccus amin...
Q164G8         1 MGKAMFYHL---TRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH----GLAGGAHD-ARq- 71  Roseobacter den...
Q5LQN6         1 MGAAYFYHL---TRNPLEATLPVLLTKALGAGWRVAVRGSDPGRLVWLDEKLWLGPDDGFLPH----GLAGGAHD-ADq- 71  Ruegeria pomeroyi
WP_013068405   1 -mpALFYHV---TQSPVEGVVETLLTRALAQGWRVELRGVSPERMDWLDQKLWLGPEEDFLPH----GLAGGPHD-ALq- 70  Rhodobacter cap...
Q3J2C6         1 MGVVMFYHL---TRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALWRVPEEGFLPH----GMEGGPHD-AVq- 71  Rhodobacter sph...
WP_014101755   1 MSEIRFYHL---QTQDLGQALPQVLTKAIAGGKRVVIRLPNDDIAEKMAAHLWTYNPDSFLPH----GTKKDGFA-EDq- 71  Micavibrio aeru...
Q6MCC4        13 kSKVYFFNVk--DNQAKIHLICSKAKESFEQEKRLQILVPTIEAGQYIDSLLWRYPEDSFLTHtlttNLS---------- 80  Candidatus Prot...
WP_011714270   8 plRVRFYQL---ATDSRERALLKILNKVYGMGLRVCIVVEDRQQAQGLDEHLWRHPPDSFLPH-------------ATsv 71  Magnetococcus m...
Q2SKR1        75 -------P--VFLCTR-LPEt-iSTEVVI-----NLT--EAPPD---KADRVIELVTGDPG-ARAKSRKVYKLYKQLGFE 132 Hahella chejuen...
WP_011747243  70 -------P--VLLTVE-GQAaanAARCLIaldgaEVSgaEc-----lALERACLIFDGNDPeALERARAQWRALKAEDVA 134 Paracoccus deni...
WP_020949485  70 -------P--VLLTLV-GQGatnNPSCLItlhgaEVAaeDc-----aPLERTLILFDGNDPeALERARAQWRLLTKAGVS 134 Paracoccus amin...
Q164G8        72 -------P--ILLSTT--SDipnAATCVMsvdgaDVAadEv-----aQLDRVCVLFDGNDAqALDVARGQWSALKKAGAA 135 Roseobacter den...
Q5LQN6        72 -------P--VLLTTG--ADapnGARCVMsvdgaAVTpeEv-----aALERVCILFDGTDPaAVEAARGQWRALTAAGCA 135 Ruegeria pomeroyi
WP_013068405  71 -------P--VLLTTS--PRp-eGRQAVMtldgaEVTpaEv-----aAAERVWILFDGRDEtAVARARDQWKALTGAGTA 133 Rhodobacter cap...
Q3J2C6        72 -------P--VLLGTG--AIg-nGAQALMlldgaETQaaEa-----aPLERVWILFDGLDEaELARARGQWKALTGAGVK 134 Rhodobacter sph...
WP_014101755  72 -------P--IYITAG--NDnpnKADLLItgmgvA-Pd-Dv-----dHFALVCEFLDGHDDaQIAAARQRWKTYKDAGHA 133 Micavibrio aeru...
Q6MCC4        81 -------PewIVITTEeTVNl-nLAARLL-----NLC--PHPIKyfsLFAEIYELYDESHPqKLENSKLRFKNYQDWGLA 145 Candidatus Prot...
WP_011714270  72 dpfpeaqP--ILISEQ-PVDp-nGATVVV-----MLT--PVPLEnldQFDTVVDFVPDDPQ-AKRASRLRYKHYKDAQCQ 139 Magnetococcus m...
Q2SKR1       133 LQ 134 Hahella chejuensis KCTC 2396
WP_011747243 135 AE 136 Paracoccus denitrificans
WP_020949485 135 AE 136 Paracoccus aminophilus
Q164G8       136 AE 137 Roseobacter denitrificans OCh 114
Q5LQN6       136 AQ 137 Ruegeria pomeroyi
WP_013068405 134 AQ 135 Rhodobacter capsulatus
Q3J2C6       135 AQ 136 Rhodobacter sphaeroides 2.4.1
WP_014101755 134 IT 135 Micavibrio aeruginosavorus
Q6MCC4       146 Ls 147 Candidatus Protochlamydia amoebophila UWE25
WP_011714270 140 ME 141 Magnetococcus marinus
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