Conserved Protein Domain Family
FlgM

?
pfam04316: FlgM 
Anti-sigma-28 factor, FlgM
FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium. The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery.
Statistics
?
PSSM-Id: 487033
Aligned: 233 rows
Threshold Bit Score: 35.5439
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_104022096   45 DSVQISDAGRA-LSTGE----TSgsSsLTPERVAELRRRVLEGAYnaNHVVSQVAQRIL 98  Gemmatirosa kalamazoonensis
WP_014961997   52 dvlVISGPAKQiAHLRDlirqEP--D-IRSEKVMEIKNRVNRGEY--HVPAREILRKMV 105 Leptospirillum
Q74B56         40 DTVDLSRNAERlVKANAtlrtMP--D-VRVEKVEELKKQIAAGEY--NVSARDVAEKML 93  Geobacter sulfurreducens
WP_013259141   44 DTVALSNRSKElARAHEa--vVNapD-VRRQKIEELKRQVANNEY--QVNAEQVAHRMI 97  Desulfarculus baarsii
Q39TB3         39 DTVQLSGNAERvARMSEalqkIP--D-IRVERVQELKRQVAAGEY--AVSARDVAEKML 92  Geobacter metallireducens GS-15
WP_011939948   43 DKVNISQSAERfNKTSNtlkgAS--D-FSADKVNELKSKIEAGAY--QVSSKDVAEKML 96  Geotalea uraniireducens
WP_012647267   44 DKVDISVGAERvNKTSIslkgPE--N-FRADKVAEIQSKIDAGTY--QVSGRDVAEKLI 97  Geotalea daltonii
WP_012529200   41 DKVELSSYMPLvPKAQRr------lD-FRTEKVEELKSQIQAGTY--QVSGRAVAEKML 90  Citrifermentans bemidjiense
jgi:Toce_1599  59 DRLSLSSDAVEiKRALElaskTG--E-IRTEKVAELKERIEKGTY--NIEGRLIAEKMV 112
Q2LT27         41 eKVELSDAVKEiQQIKNtvdnIP--D-VRDDKVTALKNQIDNNTY--NVNAEEVAEKMV 94  Syntrophus aciditrophicus SB
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap