1WUB,3HPE,5W17,5IXH


Conserved Protein Domain Family
YceI

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pfam04264: YceI (This model is not part of the current CDD release)
YceI-like domain
E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.
Statistics
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PSSM-Id: 516138
Aligned: 629 rows
Threshold Bit Score: 37.6484
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WUB_A               3 WNLDP--SHTSIDfKVRHmgiA-SVRG--------------SLKVLSGSVEtdeagrpiQVEAVIDAASIATGEPQR--- 62  Thermus t...
WP_015772389        90 YRVDEvlNGTDVT-VVGR---TnNVTG--------------TLTVTDHTLD--------SGSITVDTASIATDEERR--- 140 Jonesia d...
WP_014738619        68 YRVHEvlNGADAT-VAGT---TdQVTG--------------SVVITGGDLA--------DADLSVDVASIATDSGQR--- 118 Modestoba...
WP_005516162        70 YTVSEilNGARVT-VVGT---TdQVNG--------------NATVADQKLT--------SAEVVVQVAGIATDNARR--- 120 Prescotte...
WP_012085282        89 YRVDEvlNGQRIT-VTGR---TdQVTG--------------DFVVAGGQLT--------AATVSVDLASVSTDSSQR--- 139 Kineococc...
jgi:Xcel_3289       82 YRVDEvlRGENAT-ATGR---TeQVEA--------------EVMLDDGAVT--------AATVTVDMASVATDQPPR--- 132
WP_013118721        71 YRVEEvlRGQDVT-VTGR---TeQVTG--------------EVTVADGELT--------AATVEVDMASIATDQPPR--- 121 Cellulomo...
WP_013839986        72 YRVHEvlRGEDVT-VTGR---TeEVTG--------------SVTIADGTLT--------DAEVVVDIESVRTDEPPR--- 122 Isopteric...
WP_013864259        90 YRVDEvlNGQDVT-VVGR---TdKVSG--------------TIEIAGNELT--------AAEIEVDVASVATDTDRR--- 140 Microluna...
CeBiTec:B843_04945   9 YQVDEvlKGVNST-----------VNGstdavtgqaviddsTLKS---------------ASVDVNLNDVHT---SFkar 59 
1WUB_A              63 DGHLRSaDFLHAEQYPEIRFVSTQ-IE--------Pl-----G-GnrYRIQGNLTIRDITKPVTLEAEVSapikdpwgmq 127 Thermus t...
WP_015772389       141 DDYFRE-NTLKTADFPTAVFTLTEpVDvtelltngEis--------aMPVAGELTIAGETQPVTAELQAA---------- 201 Jonesia d...
WP_014738619       119 DSYFRG-NVMDVDANPTATFSVTQpADlpe--ltgTpv--------tVPVTGELTLKGVTQQVQTEISVV---------- 177 Modestoba...
WP_005516162       121 DGQFRG-NVMDTENFPTAKFALTTpVDlatlptdgTaa--------tVKADGTLTLKDQTRPVSVEVKVL---------- 181 Prescotte...
WP_012085282       140 DGQFRS-RVVDVERFPTADLVLTRpVPlggl-dvgAti--------pVTLTGTLALRGTTREVTFPATVQ---------- 199 Kineococc...
jgi:Xcel_3289      133 DRYFRT-SALATDVFPTATFELTEpAPlpag-------------ataVDLTGDLTIHGVTRQVTVAAELG---------- 188
WP_013118721       122 DGYFRD-QAIEVRRFPTGTFTLTEpADid----gaD-----------VQLTGDLTIRDVTREVTVDAQVA---------- 175 Cellulomo...
WP_013839986       123 DAYFRG-TVMEVGTYPTATFVLTEpAPle----pgQt---------aVELTGDLTIRDVTREVTVDAEVA---------- 178 Isopteric...
WP_013864259       141 DTYFRS-NAMQTDEHPTATFTLTKpVElpe--igaKav--------kVKATGNLELAGASRPVTATIEVV---------- 199 Microluna...
CeBiTec:B843_04945  60 DEYFSS-QVVDTNLHPIASFRATEpVDlkellvdtSdnmqqnSvDv--dIPGELDLNGQVMPATAKATV----------- 125
1WUB_A             128 rVA--AS----ASGQINRKDWN--------LTW--NQvlelgaLLVGEEVKFNL 165 Thermus thermophilus
WP_015772389       202 -VDg-NSiqvaGNIPITFADFG--------VQApnLGf-----VSVEPSGSVEf 240 Jonesia denitrificans
WP_014738619       178 -RTg-AGvdvsGSVPVTFGDYG--------IDApnLGf-----VRVDDQGAVEF 216 Modestobacter italicus
WP_005516162       182 -HTg-DTlvasGAVPVTWSDYG--------ITPpsLGf-----VTVDDNGTVDF 220 Prescottella equi
WP_012085282       200 -RTgeDAvtvtGSLPVTWSDHG--------VEApdLGf-----VSVEDTGTIEF 239 Kineococcus radiotolerans
jgi:Xcel_3289      189 -ATgqDAvqvvGSIPVTFADYD--------VEApsLGf-----VRVQDAGFVEF 228
WP_013118721       176 -ADg-DTvqvvGSAPITFTEFG--------VTApsLGf-----VTVEEDGFVEF 214 Cellulomonas flavigena
WP_013839986       179 -TTd-DGahvvGSVPLTFADYG--------VEApaLAf-----VRVDGEGSIEF 217 Isoptericola variabilis
WP_013864259       200 -RAg-DSvrasGSIDVTFADWG--------IQApnLGf-----VKVEDSGQVEF 238 Microlunatus phosphovorus
CeBiTec:B843_04945 126 -IVtqQGmqvrGVVPMVWQDFGitppdlnvV-------------KVADSGELQF 165
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