3K70


Conserved Protein Domain Family
Exonuc_V_gamma

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pfam04257: Exonuc_V_gamma (This model is not part of the current CDD release)
Exodeoxyribonuclease V, gamma subunit
The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolyzis, hydrolyzis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognises and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilise the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Statistics
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PSSM-Id: 516134
Aligned: 46 rows
Threshold Bit Score: 174.035
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K70_C          2 LRVYHSNRLDVLEALMEFIVeRE-RLDdPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEi 80   Escherichia c...
WP_011520708    2 FTIYQSNKLDVITSILISLI-SErKLReTLQPEIILVQNHNITQWLQVELAMSLGIAANIRFSTPTIFIYKLLSSILPEm 80   Candidatus Pa...
Q5NF50          3 LYTYPSNKLEYLVQVLSKLL-DV-EKKdLFTPTQLIVGSRGMQHWLNMQLAEYRNIAMNLKYDMINGYILDICYELTAKq 80   Francisella t...
Q8F7I0          3 ITHITSLSLEDITSELSQNI-LKeRKNfPLRSITIVVPSVNMRSWLNLNLARISGLCANLRFLFLEKALEEYFHFRAGL- 80   Leptospira in...
Q8D2T9          2 IYIYQSNQIDLIQKILSKIL-KNfPINnPMKKEIIITSSSNISEWLKLNITLNINILANVEFISLNSFIWKLVILTTKNv 80   Wigglesworthi...
Q057F6          2 LKIYQSNKINFLLKKICKKI-YIkKKKkILINEIFLIENKYVQKWLELYIANKKKINFNIKFILLFRFLNNFFKKNNIKk 80   Buchnera aphi...
P57528          2 FTIYKSNSLNTLLLKAYHII-EEkPFSnIFEKEIFIYDNKVLFQYLNIFIAEKKGISANFKFYHPNDFIWKLFKIILSKk 80   Buchnera aphi...
WP_012030598    2 FRITQATDLAHLMPDFLTAL-HD-YPDdIFAETEIVVPSMAIADYLEHHIAEKMGISCRHRYRFWGEMEWTIIERLSNRs 79   Dichelobacter...
Q7VBK2          2 LTVYRSNRAEWLAEVLAAQL-RL-NKPkPFQSVEIMVNTWPTSRWLSEQIATFNGISALIEFPFPNSHLRKFVQLFLGLe 79   Prochlorococc...
Q46K44          2 LTIYRSNKAEWLAEILGQEL-RL-NPPeITEEVNIIVSTWPSSRWLSEKLSIINNINALVKYPFPGTYLKRLVKRIIGId 79   Prochlorococc...
3K70_C         81 -pKESAFNKQS-----MSWKLMTL-----LPQL--LER-E-------DFTLLRHy-------------------LtddSD 120  Escherichia c...
WP_011520708   81 -nLEMFFSRSL-----ISWKIRLI-----LPHF--YDQ-P-------NCSLIRQyl----------------hnD---VD 120  Candidatus Pa...
Q5NF50         81 -eYKKAYTKDI-----LAWRVFRL-----LSSQnqEKNtHshaggnlIADGLSSkdtslcgydnrdgwssklkeYy-qDS 148  Francisella t...
Q8F7I0         81 --DYDPFQRTFpsqdaIQRKILTF-----------------------LIENLNSeetkf--------------lgsflES 121  Leptospira in...
Q8D2T9         81 -pFDNFAFRLM-----LSWYIAQI-----IPKI------NknikiknVYKNLNQfqi----------------------- 120  Wigglesworthi...
Q057F6         81 nkKLIIFEKKY-----LQWIIILIiyn------------------tyDCSFLKKygi----------------------- 114  Buchnera aphi...
P57528         81 -eLKNIFTHSM-----IIWEIIKI-----LDNKk-------------FFENCSKk-----------------------KD 113  Buchnera aphi...
WP_012030598   80 -aAQTPLSTTA-----IHWQLFSWlyahrAEILadEDH---------VLAPLLHyllaps-------------sardeQT 131  Dichelobacter...
Q7VBK2         80 vtSKDPWNTNQ-----LTWEIIDV-----LPKLlkEE----------ESKHLHEwiqkg--------------snnnkEL 125  Prochlorococc...
Q46K44         80 pdEKDPWEKNQ-----LVWNILEL-----LPELmkVE----------EAQVIRSwleis--------------dkkdtQI 125  Prochlorococc...
3K70_C        121 KRKLFQLSSKAADLFDQYLVYRPDWLAQW--ETG-------HLVEGLGEA-QAW-----------QAPLWKALVEYthql 179  Escherichia c...
WP_011520708  121 KRKQFHLSEKIADLFYQYFLYRPDWLEIW--QQGk-------RVASLGPD-QNW-----------QALLWRALIEEnmls 179  Candidatus Pa...
Q5NF50        149 DLKKYQLSVKIAETFSKYISYRSEWLQKW--EKDe-----yINPSKLEND-EDW-----------QMLIWQNLVKDiaet 209  Francisella t...
Q8F7I0        122 IPRAFSLSAKLTSLYKDYELNRSSWIQSWanEKGldipsisHRPTPFPKEdEYYl---------fQKKLYQKVFLNsnq- 191  Leptospira in...
Q8D2T9        121 ----fylSYKLSELYNKYLIFKPDWIDLL--NFKk-------KSKKLEDS-QYF-----------QLIIWNLLVKKikke 175  Wigglesworthi...
Q057F6        115 qyKNFEFCSHIANIFIQYIYFQPHLIYEW--ENNk-------KSKKKEKKtYQW-----------QKKLWNLIIKKikml 174  Buchnera aphi...
P57528        114 MIKKFKFSFLMASIFKKYILYRPEWINQWeiEKNi----------SIFDKnEQW-----------QIKLWMEIIHNtkki 172  Buchnera aphi...
WP_012030598  132 LPRLWQFSGEQAQLFTHYLKMRPDWLLTW--QQKpdc--hlEDIIATLPEmPTWlrqhydgvftvQKYLWQQLFAEa--- 204  Dichelobacter...
Q7VBK2        126 DKRIWTLAKSIANTINEYILYRPDVIAQWwnLDSkp----tKSLRDLPPH-IKW-----------QPLLLRLLKTKi--- 186  Prochlorococc...
Q46K44        126 NLKLWDLANNIAETFDDYILYRPEIIKQW--LSKkm---kkKSREISVNKnILW-----------QEILFNLLYKKi--- 186  Prochlorococc...
3K70_C        180 gqprwhranlyqRF--IE-------TL---ESa-TTCPPGLPS-RVFICGISALPPVYLQALQALGKHI--EIHLLFTNP 243  Escherichia c...
WP_011520708  180 t-------nlyqLF--IQ-------AM---KHm-TVRPSGLPD-RIFIYAVSSLPPIYLQVLQALSNHI--DIHFMLVNP 236  Candidatus Pa...
Q5NF50        210 p-----------ykvqLE-------ALqklDKq-NLEKLNISS-DIYIFGVNTISPKNLKFIFELAKYI--NVHILYINP 267  Francisella t...
Q8F7I0        192 ----------------------pstLIqffLKevFKNPRRSPQdSLHLFCLSNLADTYLGILESISKKDklPIYLYQFHT 249  Leptospira in...
Q8D2T9        176 kdf--cissiyeSC--IQ-------KI---EKs-NLIFEDIAD-RIFIFGIYYIPEIYLKILKTLSKKI--DIHLFCINP 237  Wigglesworthi...
Q057F6        175 ---------kcnNF--TEiisnfikKIe-----kKKKLKKIPK-KIFILSNQNINILMYFILFSIKHIT--KIYLFEFNP 235  Buchnera aphi...
P57528        173 nqs---sdhfanLFynIQ-------KI---IKekKIKKKYLPK-RFFIISSFSMNPSYIKIFQNISIYT--DIYFLYITP 236  Buchnera aphi...
WP_012030598  205 ----------------MEhrqqrieQFyhrLSv-DDALPALPA-RLFVFHPFSLTDHMLHWLQAFGQRC--EVHLWLALV 264  Dichelobacter...
Q7VBK2        187 ---------------kSEpiclqinEVvtrLKrkEHSSKELPR-DLLIFGVSSLAPIQIELIQALSSVV--NVQIFLLTP 248  Prochlorococc...
Q46K44        187 ---------------nKDpfciqveKAikrLKkdDISKLDYPK-NLYVYGLSSLAPLQIDLIQAFSKVI--NIKIYIISP 248  Prochlorococc...
3K70_C        244 C---------RYYWGDIKDPAYLAKLLTRQRRHSFEdrelplfrdsenagqlfnsdgeqdVGNPLLASWGKLGRDYIYLL 314  Escherichia c...
WP_011520708  237 Yrfnr--inkQSYTQQPIYSTNTNQK----------------------------------SINPLLEYWGKQGKDTISLL 280  Candidatus Pa...
Q5NF50        268 C---------SEYWYDLHKSKISAWLDSDDY-----------------------------EIQPLLANLGQQGKEFFNQL 309  Francisella t...
Q8F7I0        250 GastkteslgPQRWSNPQIH----------------------------------------ISSKIVSIPGTISKNLEDTR 289  Leptospira in...
Q8D2T9        238 C---------CLYWFDIDNRFYISNLIENKIKNKKNffr-------------------kkIKISLLSFWGCLGAKYLKLL 289  Wigglesworthi...
Q057F6        236 Ldrk------------------------------------------------------knKTKKIINYFQKKFQYIKNPI 261  Buchnera aphi...
P57528        237 F---------KKNIFNFIQDNKIFTDIKIEKKNI--------------------------LNDSLITLWGQYEEIYYFYI 281  Buchnera aphi...
WP_012030598  265 S---------NGYFPDIVDERWRQSHTNADEHFR--------------------------SGHVLVSRFGKQQRDIFRLC 309  Dichelobacter...
Q7VBK2        249 G---------QDLWKRCKSRREELGNDWKVPMDGMWm----------------------lKTPRIEASLGRMGSEFQQLL 297  Prochlorococc...
Q46K44        249 C---------NDLWQRCEARRLQFRNTWNTPPDRQWl----------------------lESPRLEAFLGRMGAEYQQLL 297  Prochlorococc...
3K70_C        315 sdlessqeldaF------VDVT--------PDNLLHNIQSDILEL 345  Escherichia coli K-12
WP_011520708  281 selkniqkidaFvel-------------sqEKSLLSLLQLDILED 312  Candidatus Palibaumannia cicadellinicola
Q5NF50        310 le--------------neQQQElevfekfdKESLAFEKLADNNQT 340  Francisella tularensis subsp. tularensis
Q8F7I0        290 iyp-------------------------ekLSALKNLLKGEIRGH 309  Leptospira interrogans
Q8D2T9        290 nnlnenienkiF------YKPK--------KDNLLHTIQNDILYN 320  Wigglesworthia glossinidia endosymbiont of Gloss...
Q057F6        262 ke--------------niKIKKkyffyknnKKKILSYLKNDILKK 292  Buchnera aphidicola BCc
P57528        282 lk--------------skKNKVincfkknkNKSLLSQIKNNFFND 312  Buchnera aphidicola str. APS (Acyrthosiphon pisum)
WP_012030598  310 q----------ShnlleeIQHItphsadtaQQSLLQRLQADMRAL 344  Dichelobacter nodosus
Q7VBK2        298 eg---------------------------sGEYQLGEWQEKDLFS 315  Prochlorococcus marinus
Q46K44        298 eg---------------------------sGEYQLGDRNEEDIFS 315  Prochlorococcus marinus str. NATL2A
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