Conserved Protein Domain Family
Transp_Tc5_C

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pfam04236: Transp_Tc5_C 
Tc5 transposase C-terminal domain
This family corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA binding (pers. obs. A Bateman).
Statistics
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PSSM-Id: 398081
Aligned: 8 rows
Threshold Bit Score: 93.2558
Threshold Setting Gi: 0
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFP13218     508 WRKAGFMdkeVSPSPFQTPSEYC-FGpEVSNENCYINGCSEMSFILCSRCKFYICFDHFCISLNHFC 573 Caenorhabditis remanei
EGT31220     463 WKKAGYV---DTYSPFLNPSQFC-FG-HSGSEDCYINGCQEYAFIHCARCKNFICFNHFIVLLKHLC 524 Caenorhabditis brenneri
EGT55375     463 WKKAGYT---DVSSPFLTPTQFC-FG-EVKNEDCKKRGCTSLAFIKCARCGDCLCFDHFILKEQHFC 524 Caenorhabditis brenneri
EFO98050      88 WKKSGYLdkdANEPQFTTPANYC-MD-QAASGDCYIIGCKESGCLKCARCKNWVCFDHLLVSQLHLC 152 Caenorhabditis remanei
EFO87452     242 WKKSGYMdrdANEPEFTTPAEYC-MG-KATPEDCYISGCGELGCLKCARCQNWVCFDHLVVSQIHLC 306 Caenorhabditis remanei
EFN87294     294 WYKSGYLs--TRPEKFHNPIDYCyFKeEKRIPKCSI--CGKMAFIRCAWCKQYFCFEHFF-EQYHYC 355 Jerdon's jumping ant
1_pfamImport   1 WSASGYDv--PRPQPFLTPAQHM-FP-KNCAGDCAFPGCQETSFIKCIYCTELLCFNHFVVVFHQCC 63 
CAP29620     182 WVAAGYDv--PRPASFETPAQLL-FP-RGVAGDCTMHGCSSTSFVKCLYCEKLFCFEHFVI-DHHNC 243 Caenorhabditis briggsae
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