2YIB,2QJ1


Conserved Protein Domain Family
Birna_RdRp_palm

?
pfam04197: Birna_RdRp_palm 
Birnavirus RNA dependent RNA polymerase (VP1), palm domain
Birnaviruses are dsRNA viruses. This entry corresponds to the "palm" domain of the RNA dependent RNA polymerase, also known as VP1. All of the birnavirus VP1 proteins contain conserved RdRp motifs that reside in the catalytic "palm" domain of all classes of polymerases. However, the birnavirus RdRps lack the highly conserved Gly-Asp-Asp (GDD) sequence, a component of the proposed catalytic site of this enzyme family that exists in the conserved motif VI of the palm domain of other RdRps. The catalytic motifs are arranged in a permuted order in sequence.
Statistics
?
PSSM-Id: 461223
Aligned: 5 rows
Threshold Bit Score: 993.324
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2YIB_D   1 MSDIFNSPQNKASILTALM-KSTTGD-VEDVLIPKRFRPAKDPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALP 78  Infectious pancreatic...
P22173   1 MSDIFNSPQNKASILTALM-KSTTGD-VEDVLIPKRFRPAKDPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALP 78  Infectious pancreatic...
Q8AZL8   1 MSDVFNTPHARRTITQALG-LTNVSDrTQDWLLPEPWNPPMDPIKNSQEAAEYLQRNQYRMLKPRAIPENTPLDTSELFP 79  Blotched snakehead virus
Q82630   1 MSDVFNSPQARSKISAAFGiKPTAGQdVEELLIPKVWVPPEDPLASPSRLAKFLRENGYKILQPRSLPENEEYETDQILP 80  Infectious bursal dis...
2QJ1_A   8 MSDVFNSPQARSTISAAFGiKPTAGQdVEELLIPKVWVPPEDPLASPSRLAKFLRENGYKVLQPRSLPENEEYETDQILP 87  Gumboro virus
2YIB_D  79 RLRQM--VEDGKLKDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFgAPDITLLKQLTFFLLE-----NDFPTGPETLRQvr 151 Infectious pancreatic...
P22173  79 RLRQM--VEDGKLKDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFgAPDITLLKQLTFFLLE-----NDFPTGPETLRQvr 151 Infectious pancreatic...
Q8AZL8  80 HLAEF--VGSGAFGTSTLVPAGSTEYIPRYYPTHKPEHNKPTPFgHYDVALLKQMTYQLTNg---kDNPEEEGTTFRQfr 154 Blotched snakehead virus
Q82630  81 DLAWMrqIEGPVLKPTLSLPIGDQEYFPKYYPTHRPSKEKPNAY-PPDIALLKQMIYLFLQvpeatDNLKDEVTLLTQ-- 157 Infectious bursal dis...
2QJ1_A  88 DLAWMrqIEGAVLKPTLSLPIGDQEYFPKYYPTHRPSKEKPNAY-PPDIALLKQMIYLFLQvpeanEGLKDEVTLLTQ-- 164 Gumboro virus
2YIB_D 152 eAIATLQYGSGSYSGQLNRLLAMKGVATGRNPNKTPKTVGYTNEQLAKLLEQTLPINTPKHED---PDLRWAPSWLINYT 228 Infectious pancreatic...
P22173 152 eAIATLQYGSGSYSGQLNRLLAMKGVATGRNPNKTPKTVGYTNEQLAKLLEQTLPINTPKHED---PDLRWAPSWLINYT 228 Infectious pancreatic...
Q8AZL8 155 dTIVEQQYGSGTSQGQLARLVAMKEVATGRNPNKSPKELGLSMEEIATMLEQTLPIGQPGGDEg-wPSLTTTLSELLNPA 233 Blotched snakehead virus
Q82630 158 -NIRDKAYGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGEDDkpwVPLTRVPSRMLVLT 236 Infectious bursal dis...
2QJ1_A 165 -NIRDKAYGSGTYMGQANRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGEDDkpwVPLTRVPSRMLVLT 243 Gumboro virus
2YIB_D 229 GDLSTD---KSYLPHVTIKSSAGLPYIGKTKGDTTAEALVLADSFIRDLGR-----AATSADPEAGVKKTITDFWYLSCG 300 Infectious pancreatic...
P22173 229 GDLSTD---KSYLPHVTIKSSAGLPYIGKTKGDTTAEALVLADSFIRDLGR-----AATSADPEAGVKKTITDFWYLSCG 300 Infectious pancreatic...
Q8AZL8 234 EGM-------DYLPHITMKSSSGLPFIGKTKGETVTSALAICDTFLREVSEcvkegA--MASDNQKLQKLLQDYWYLSCG 304 Blotched snakehead virus
Q82630 237 GDVDGEfevEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQFLRELSAllkqgAGTKGSNKKKLLSMLSDYWYLSCG 316 Infectious bursal dis...
2QJ1_A 244 GDVDGDfevEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQFLRELSTllkqgAGTKGSNKKKLLSMLSDYWYLSCG 323 Gumboro virus
2YIB_D 301 LLFPKGERYTQVDWDKKTRNIWSAPYPTHLLLSMVSTPVMNESKLNITNTQ-TPSLYGFSPFHGGMDRIMTIIrdsLDND 379 Infectious pancreatic...
P22173 301 LLFPKGERYTQVDWDKKTRNIWSAPYPTHLLLSMVSTPVMNESKLNITNTQ-TPSLYGFSPFHGGMDRIMTIIrdsLDND 379 Infectious pancreatic...
Q8AZL8 305 LLFPKAERYEKKAWLTKTRNIWSAPFPTHLLLSTISWPIMNSSKNNILNVPeCVSLYGFNPFSGGMDAVVTNIl--AQPD 382 Blotched snakehead virus
Q82630 317 LLFPKAERYDKSTCCTKTRNKWSAQSSTHLMISMITWPVMSNSPNNVLNIEgCPSLYKFNPFRGGLNRIVEWI---MAPD 393 Infectious bursal dis...
2QJ1_A 324 LLFPKAERYDKSTWLTKTRNIWSAPSPTHLMISMITWPVMSNSPNNVLNIEgCPSLYKFNPFRGGLNRIVEWI---LAPE 400 Gumboro virus
2YIB_D 380 EDLVMIYADNIYILQDNTWYSIDLEKGEANCTPQHMQAMMYYLLTRGWTnEDGSPRYNPTWATFAMNVAPSMVVDSSCLL 459 Infectious pancreatic...
P22173 380 EDLVMIYADNIYILQDNTWYSIDLEKGEANCTPQHMQAMMYYLLTRGWTnEDGSPRYNPTWATFAMNVAPSMVVDSSCLL 459 Infectious pancreatic...
Q8AZL8 383 ETLFLIYADNIYIYMDRTWFSIDLEKGEANATPEHAQAVSYYLLTRGWTqDDGSPAFNATWATIAMMIAPSLVVDSSCLF 462 Blotched snakehead virus
Q82630 394 EPKALVYADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWS-DNGDPMFNQTWATFAMNIAPALVVDSSCLI 472 Infectious bursal dis...
2QJ1_A 401 EPKALVYADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWS-DNGDPMFNQTWATFAMNIAPALVVDSSCLI 479 Gumboro virus
2YIB_D 460 MNLQLKTYGQGSGNAFTFLNNHLMSTIVVAEWVKAGKPNPMTKEFMDLEEKTGINFKIERELK 522 Infectious pancreatic necrosis virus
P22173 460 MNLQLKTYGQGSGNAFTFLNNHLMSTIVVAEWVKAGKPNPMTKEFMDLEEKTGINFKIERELK 522 Infectious pancreatic necrosis virus -...
Q8AZL8 463 MNLQLKTYGQGSGNAWTFLINHTLSTILVGKWIEAGQPNPRSKEFMDLEAATGINFKIEREIE 525 Blotched snakehead virus
Q82630 473 MNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMKQPSPDSEEFKSIEDKLGINFKIERSID 535 Infectious bursal disease virus chicke...
2QJ1_A 480 MNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMRQPRPDSEEFKSIEDKLGINFKIERSID 542 Gumboro virus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap