8DKW,8DKW,7ZKW,7ZKW


Conserved Protein Domain Family
PQ-loop

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pfam04193: PQ-loop (This model is not part of the current CDD release)
PQ loop repeat
Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Family members are membrane transporters since two members, cystinosin and PQLC2, transport cystine and cationic amino acids, respectively, across the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts the substrate-coupled H+ binding site underlying its H+ symport mechanism, suggesting that PQ-loop repeats have functional significance. It is thus likely that PQ-loop-containing proteins act as a family of membrane transporters. Some transport cystine and cationic amino acids, respectively, across the lysosomal membrane. Others transport lysine and or arginine across the lysosomal membrane in order to maintain the acidic homoeostasis.
Statistics
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PSSM-Id: 516096
Aligned: 208 rows
Threshold Bit Score: 34.027
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8DKW_P       126 INQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYI 186 human
Q9LTI3        30 ISKLLGYFLVAASMTVKLPQIMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSA 90  thale cress
Q66I07        46 LSKTMGIFILMGIVIAPLPQICKILWCGSSYGLCLTSVFLDLMAISTHAAFCYTQNFPIGA 106 zebrafish
XP_001563396  39 VSNYLSYAVVVGASILKVPQILKVWQNNKAAGISLLSLFMELLSYIISTSWGVVRGLPFRD 99 
Q57UD3        22 LATILPYGIVFGSVLLKLPQIVKILRNHSADGISIISLVVELMSCVISSSWGIARSLMFKD 82  Trypanosoma brucei
Q4DDX9        32 VADVLPYAVVLGSVLLKFPQILKILQHRSADGISLASVYFEMTAYVITTSWGIAQALNFKD 92  Trypanosoma cruzi
A0E5Y5        54 ISRTISILMVAFAIMNQLPQILKIFKSQSTQGISFNSYYTELYLFSFITAYNIYKQTKFIL 114 Paramecium tetraurelia
A0E4V5        58 LSEFISYSIVALSVILKAPQIFKIVQKSKVTGLSFDSIFFELFVYSFSIAYNVHKGNPWKL 118 Paramecium tetraurelia
Q29D61        21 IADLLSLITVSSCLVIKVPQINTIRENKSSKGISVLGLCLELFSYTVMISYNYTSDYDFLS 81  Drosophila pseudoobscura
XP_001615464  23 LNSVFIYSIIVGSCFTKIPQLTKIVSKKNAAGISFASVYVEILVATSLIVFSIKEKLAIKL 83  malaria parasite P. vivax
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