Conserved Protein Domain Family
Gcd10p

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pfam04189: Gcd10p (This model is not part of the current CDD release)
Gcd10p family
eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.
Statistics
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PSSM-Id: 516092
Aligned: 90 rows
Threshold Bit Score: 179.292
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ERT03134       4 VIQPNAWIGLK-LPSE-NVRFLRIAPNTTISLGKYGSFPSNLIIHRPYHLTYELLDKRDDEPFSrlrVIptDELYADVFA 81 
Q018Q1        33 AMRENDVVLLE-MNDGeRATFATLRAGKVIDLGKRARAPAEAFLGAPFGSMYEARHNTGEVER--------IGATTEVIN 103 Ostreococcus tauri
XP_003983793  19 RIRDGDFVVLK---REdVFKAVQVQRRKKVTFEKQW-FYLDNIIGHSYGTTFEVTNGGSLQPKK--------KKEEPTSE 86 
XP_007229761  15 RICEGEYVVLK--RGE-VYKSVQVEKRKKVIFEKQW-IFMDNAVGQLYGSTFEVDSGG---------IL---NLRKPKQD 78 
XP_005805701  12 RIKEGDHIVLK---RGdVYKAVQIQRKKKVIFEKQW-ILLDNVVGHLYGTTFEIASGGTLQPKE-------DKETGSSTD 80 
6_pfamImport   1 FISLNKTVILD---KNgILKAVKLIPNKMIVFEKLR-FKPDKAEGMNFGTIFKgg---------------yITTDVDSLD 61 
9_pfamImport   1 M---GDYVILTtLLGKkVFRLAKVEETGDVYFKKER-INLKTLIGAQYNSIHRLDRSTRTLKHAgl----tQEQLREILD 72 
Q4CWY5        17 RIALGDHVIIT---GGgVKRMALVQAGNKLRLGSSGVVQLEKLVGLRFGEVLRYDPKDRVLLPTna----yPDLDITSLQ 89  Trypanosoma cruzi
XP_011264922  57 VITVGIHVIVK---KQsFSKVYKVSENGTLMLGKNQKVEMHEIIGKPFWSTFEMVPKHGSKNTYslklvertes------ 127
2_pfamImport   1 IIARGHYLIIN---KNeTYLIHQISNKAILKLGRDV-IDLKAAIGQPFSSTYKLEPMPEKKRHYslvicndnqv------ 70 
ERT03134      82 DEAqaaaSAmdaArgrtgdeadadgevengvdgggdgdfpglgddagtssveytlvdmesqaVIARSNR-ATID-ADARQ 159
Q018Q1       104 EETddeeAFaapL-------------------------------------------------ADERSNK-NVPNtEHGAQ 133 Ostreococcus tauri
XP_003983793  87 TKEa------------------------------------------------------------GTDNR-NIID-DGKSQ 104
XP_007229761  79 EDStdnkEA-------------------------------------------------------GLDNR-HIVD-DGKSQ 101
XP_005805701  81 VKVa------------------------------------------------------------GTDNR-NIVD-DGKSQ 98 
6_pfamImport  62 THAdd---------------------------------------------------------aqGKDNRlSLIDtHGKSQ 84 
9_pfamImport  73 VSFtfteLNvd---------------------------------------------------dESKDNR-LIND-DGLAQ 99 
Q4CWY5        90 QRLe-----------------------------------------------------------dARDNR-HLVD-DNRNQ 108 Trypanosoma cruzi
XP_011264922 128 -------------------------------------------------------wddlkgelsGQDNR-FITD-DGTSQ 150
2_pfamImport  71 -------------------------------------------------------rnqwstngcGTDNK-LITD-DSSSQ 93 
ERT03134     160 TLTTDEIEALKRE-GTGaGRDLIAKLLLSHAALDQKTAFSLAKYKLLKTKKYIRRFTVLPLDVYTLGNWLLDD-K----D 233
Q018Q1       134 TLTDSEIAALKRE--FT-GEEMVEIIAAYSKTFEEKTAFAQEKYKARKLKKHMTKILARFPSPRVVCEQYFY--E----N 204 Ostreococcus tauri
XP_003983793 105 KLTQDDIKALKDK-GIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYA--R----E 176
XP_007229761 102 KLTRDDIESLKEQ-GLK-GQEIIQQLIDNSTTFKDKTEFAQEKYIKKKKKKYESNVTVLKPSCRILAMMYHG--R----E 173
XP_005805701  99 KLTRDDIETMKEQ-GLK-NEEIIQQLIDNSSTFNNKTGYAQDKYIKKKKKKYENTVTVLKPTCRIIAMMYHG--R----E 170
6_pfamImport  85 SIKRENIIEMKDE-GFT-GEEIVQRLVENSASFADKTAFSQNKYLKKKKKKYLSYVRVHKPNARLITQLYQE--R----E 156
9_pfamImport 100 KLDRDDIESLKNQ-GMS-GDVIIKTLVENSNTFKERNVFSQEKYLKKKQAKYSNLIRVLKPNPTLLTEMYYS--Q----G 171
Q4CWY5       109 ILSNVEIASLRQEkGVD---AFLTTLVQKSTTFHTKTAYSQEKYLRKKKKRYGTLYKVERVTPDAAAEIYLPTiNpsdvE 185 Trypanosoma cruzi
XP_011264922 151 RLSKEEILQLQES-GKS-GKEIIGSLIENSTSFVAKTEYSQEKYIKKKERKYFKFLTIYRPTILSLHEVYFR--Q----N 222
2_pfamImport  94 LLSTDEIIALKES-GES-GQNIVERLLENSKTFQLKTEYAQEKYLKKKARKYCDYLTIFKPSIRLITDVLYK--Q----Q 165
ERT03134     234 VGnKI-MDLRDEMVALLGCWANVHYGGpsrylqappamppaetaetaasktgdgeetvmvdaqplvpdaqaeevataaaa 312
Q018Q1       205 PS-KT-SYMRFDSLSMLMNMANVGAHG----------------------------------------------------- 229 Ostreococcus tauri
XP_003983793 177 PG-KI-NHMRYDTLAQMLTLGNIRAGN----------------------------------------------------- 201
XP_007229761 174 PG-KI-CHLRYDTLAHMLTMGNIHAGS----------------------------------------------------- 198
XP_005805701 171 PG-KI-CHLRYDTLAQMLTLGNIHAGS----------------------------------------------------- 195
6_pfamImport 157 PA-KI-CNIRIDTISQILTAANIRHGA----------------------------------------------------- 181
9_pfamImport 172 PM-KI-NNLRIDSLAQMLTACNVRSGA----------------------------------------------------- 196
Q4CWY5       186 PEeTRsMRLRADTLALILHHSDVHSGS----------------------------------------------------- 212 Trypanosoma cruzi
XP_011264922 223 HD-KI-GGLRMDSLAQILSYSDVQADG----------------------------------------------------- 247
2_pfamImport 166 TLpKT-IALRFDTLAQILCRVNLDPGG----------------------------------------------------- 191
ERT03134     313 dedeslleqppnllpddigsflgggRWLAVDD-TGGLLIAALAERMGIltnpeedddvedeqketkkettdantglgtsd 391
Q018Q1       230 -------------------------QTLVLET-CGGLVLGSIMHRMGG-------------------------------- 251 Ostreococcus tauri
XP_003983793 202 -------------------------KMIVMET-CAGLVLGAMMERMGG-------------------------------- 223
XP_007229761 199 -------------------------KIIVFET-CAGLVLGSVMERMGG-------------------------------- 220
XP_005805701 196 -------------------------KVLVFET-CAGLVLGAIMERMGG-------------------------------- 217
6_pfamImport 182 -------------------------NVAVVET-CSGVVLGAVLERLGG-------------------------------- 203
9_pfamImport 197 -------------------------KFMVVDT-NMGLLTAAIIDRLAGhssmf--------------------------- 223
Q4CWY5       213 -------------------------RVLVYEK-TNGHLAAALLTRLGN-------------------------------- 234 Trypanosoma cruzi
XP_011264922 248 -------------------------LHMLYDSgCQGLPAAAMLNRIGE-------------------------------- 270
2_pfamImport 192 -------------------------KYLLYENgSQGLLQAALLNQLHD-------------------------------- 214
ERT03134     392 dkdgvpedadatagddagsaeedaaqhdllerrpkrpakrarddfhvsfSLANTITLLHSNNQ-ANLT---YLKYFGYDy 467
Q018Q1       252 ---------------------------------------------------FGRICNGFVGTNpTGME---VVQNMNFD- 276 Ostreococcus tauri
XP_003983793 224 ---------------------------------------------------FGSIIQLYPGGG-PVRA---ATACFGF-- 246
XP_007229761 221 ---------------------------------------------------HGSVVQMYPGGG-PVRA---GMESFGF-- 243
XP_005805701 218 ---------------------------------------------------YGSVIQMYPGGG-PVRA---GVECFGF-- 240
6_pfamImport 204 ---------------------------------------------------NGCVVNLHNGEApPNLF---AVSHFNF-- 227
9_pfamImport 224 --------------------------------------------tssasRDYGECIQIYLDDA-PVSSwrqSVDALNL-- 256
Q4CWY5       235 ---------------------------------------------------DGVIMQVMDKVAqPNVF---LAQAMGLTr 260 Trypanosoma cruzi
XP_011264922 271 -------------------------------------------------NTGGYLINFHPGNV-PQIA---IVQAMNF-- 295
2_pfamImport 215 ---------------------------------------------------NGCLVHIFSSTSeQNALr--AVKAMNF-- 239
ERT03134     468 adphhPPHPLNDH--LLCLSWLQLLE--------------PESDTVYAQAPP--IQPADVVASWK 514
Q018Q1       277 -----PTHYDSVR--HASLS--GLIE--------------ARQKGAVEADTTraKSMETTEPSTA 318 Ostreococcus tauri
XP_003983793 247 -----PKSFLS-----------GLYEfplnkvdsllngtfSAEMLSSEPKDSasVEENNGTLEEK 295
XP_007229761 244 -----PSHFHETLh-EFPLCKVNALL--------------SGTLNLDEKDMD--SQSNDSADKEQ 286
XP_005805701 241 -----PAHFHD-----------MLHEfpicrvnallastlDTSAKDPTAEEKslNAAAEQEQIQP 289
6_pfamImport 228 -----PDSYWDD----------NLHSvplhklgpllakrsFEDEFPDEQTSKrkTSEISEVTMDI 277
9_pfamImport 257 -----SPAVIDRC--LSAINIKKLYKwefd------ndtkPKDELDTEIETKe-DITPIEPKEVD 307
Q4CWY5       261 v--------------------rELWKaiprndaflfgregTEEEQNPGDEKKktGTGKNNTNKGN 305 Trypanosoma cruzi
XP_011264922 296 -----PQELKDRHiaVNIYSFLRLH---------------YQGESSVLDNISskKITDHIKETQN 340
2_pfamImport 240 -----SETKIKQ---MLTVSLDEILN--------------TKNEDNIPAEKDeeDVPNCSDEKKR 282
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