7F4G,5C2Y


Conserved Protein Domain Family
RPAP2_Rtr1

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pfam04181: RPAP2_Rtr1 (This model is not part of the current CDD release)
Rtr1/RPAP2 family
This family includes the human RPAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 protein. It has been suggested that this family of proteins are regulators of core RNA polymerase II function.
Statistics
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PSSM-Id: 516085
Aligned: 111 rows
Threshold Bit Score: 39.5088
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7F4G_R        80 RFITPAHYSDVVDER----SIVKLCGYPLC--------QKKLG--Iv------pKQKYKISTKTNKVYDITER------- 132  human
Q5CYZ0        55 SFLRPCDLEEISIER----SDKSKCGWIQCqvgisggsSNNLKs------------KWALDKRSGNIIERSIL------- 111  Cryptosporidiu...
XP_002142063  58 IFLRPDDLEEVSVER----SSLGICGSIFC--------NKKISlkThn-----fNCNWKLDSKHGNIIKTSTL------- 113 
XP_001421325  12 HGMTNKEYQSACAER----AACGACGWTPC--------PNAPTrdDg------tTQRYEIDGKARKVREMAFV------- 66  
Q00UY0        91 AALSEREFRDACAERargtTSGTRCGWPMC--------RSNASnaSpna---saSKVFDIDGTARTVRETSWT------- 152  Ostreococcus t...
XP_012191123 616 LYLSASSWGQILEER----KLAGKCSYPPC--------TNDSPssAasglgrqrEGKFRINLRTKQVKSREELelgqagn 683 
XP_016290229 123 RILSSSSWGQVLEER----HLAGHCAYPPC--------TNSAPttGrg-----gEGRFRISLGAKSVKALEDVdlgeagn 185 
GAC76060     132 LFLSSASWGQILEER----NLAHKCSYPPC--------PHSAPaaAgp----ggRGKFRIDLRSKSVKALEDRdlgepgh 195 
XP_009267008  72 PLLSAASLARIEHER----HLADLCAYPTC--------SNRPRgaYgs-----aRDTLRIDRISLSVYSQNSSt------ 128 
EKC99188     101 SYMHAGQYAEVEHER----HLNGLCSYPLC--------SNPPAapYr------aHKRFQISARAKTIKEVEGNa------ 156 
7F4G_R       133 ------KSFCSNFCYQASKFFEAQIP 152  human
Q5CYZ0       112 ------SLFCSTNCYYLYLDLSISLS 131  Cryptosporidium parvum
XP_002142063 114 ------TMYCSTICYYQILNFNLKLS 133 
XP_001421325  67 ------RAFCSRKCMMMAEALGERLG 86  
Q00UY0       153 ------RSFCSKACVHAAEAFGRRLA 172  Ostreococcus tauri
XP_012191123 684 twdelrEFFCSKQCWARSEWILRWVL 709 
XP_016290229 186 twddvrGVFCGKACYARSEWVLRWVL 211 
GAC76060     196 tfdelrDLFCSRTCYARSEWILRWVL 221 
XP_009267008 129 -----dIAFCGSVCQQRAQWARTRCV 149 
EKC99188     157 -----dEGFCSKKCRVKSQWVRENLG 177 
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