4M3O


Conserved Protein Domain Family
RPAP2_Rtr1

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pfam04181: RPAP2_Rtr1 
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Rtr1/RPAP2 family
This family includes the human RPAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 protein. It has been suggested that this family of proteins are regulators of core RNA polymerase II function.
Statistics
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PSSM-Id: 398036
Aligned: 121 rows
Threshold Bit Score: 42.5734
Threshold Setting Gi: 122112243
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4M3O_A        54 RFLTKQDYADLVQERNLVKRCGYPLCSKSQarVRdpf-adVQMTNFLRQ-----NNPYAYL-------------TEYCTK 114  Kluyveromyces ...
CCF52538     139 LFLSSSSWGQILEERKLAGKCSYPPCSKPSpsAGa-----GGRGKFRISlrnksIKAVEDLdlgeagntwddvrDYFCSK 213  Ustilago hordei
EST05240     123 RILSSSSWGQVLEERHLAGHCAYPPCTNSAptTGr-----GGEGRFRISlgaksVKALEDVdlgeagntwddvrGVFCGK 197  Kalmanozyma br...
XP_012191123 616 LYLSASSWGQILEERKLAGKCSYPPCTNDSpsSAasglgrQREGKFRINlrtkqVKSREELelgqagntwdelrEFFCSK 695  Pseudozyma hub...
EOR02948      72 PLLSAASLARIEHERHLADLCAYPTCSNRPrgAYg-----SARDTLRIDrislsVYSQNSSt-----------dIAFCGS 135  Wallemia ichth...
EKC99188     101 SYMHAGQYAEVEHERHLNGLCSYPLCSNPPaaPY------RAHKRFQISaraktIKEVEGNa-----------dEGFCSK 163  Trichosporon a...
Q5KAM5       114 SHFTPPQYLEITHERHLNSLCSYPVCPNPPyrPY------SSSRRFVIStrartIKPKEGNe-----------eEGYCSK 176  Cryptococcus n...
CRZ24385      40 NSLDQNSWMEVIEERYLGRMCGFPLCANSVevKN--------SQKYRIDlknkkVFERSAEi------------DKFCSQ 99   Brugia malayi
P30641        39 pHLHCLGWDEVVEERYVNKQCGFPSCQKAPpkIT-------RNQMFEIDrkegkIFEFRKQr------------AKFCSE 99   Caenorhabditis...
EGT56786      38 pilHGIAWDEVIEERFVNKQCGFPACPRALpqRS-------KSQMYQIDkkegkIYEFCKQr------------NKFCTE 98   Caenorhabditis...
4M3O_A       115 AHFRCSQFYQFQL 127  Kluyveromyces lactis NRRL Y-1140
CCF52538     214 SCYARSEWILrwv 226  Ustilago hordei
EST05240     198 ACYARSEWVLrwv 210  Kalmanozyma brasiliensis GHG001
XP_012191123 696 QCWARSEWILrwv 708  Pseudozyma hubeiensis SY62
EOR02948     136 VCQQRAQWARTrc 148  Wallemia ichthyophaga EXF-994
EKC99188     164 KCRVKSQWVRENL 176  Trichosporon asahii var. asahii CBS 8904
Q5KAM5       177 KCRARSGWVEGKL 189  Cryptococcus neoformans
CRZ24385     100 ECFFRSASVRTQL 112  Brugia malayi
P30641       100 MCYQKSSFVRKQL 112  Caenorhabditis elegans
EGT56786      99 RCYQKYFFVREQL 111  Caenorhabditis brenneri
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