4JQP,1PS6,1YXO,6XMY


Conserved Protein Domain Family
PdxA

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pfam04166: PdxA (This model is not part of the current CDD release)
Pyridoxal phosphate biosynthetic protein PdxA
In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesised de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalyzed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Statistics
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PSSM-Id: 516074
Aligned: 337 rows
Threshold Bit Score: 245.457
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4JQP_A        47 RPLVIGDAKRLERANqivggemkirriedasearyeQGT-------------IDCIDLGlip-ddlPFGQLSAIAGDAAY 112 Paraburkholderi...
WP_014131796  33 RPVIVGDRHLMNPFVraggfeietd------------------peswgrsgsVDLFDVPgidaaevTPGTPTAASGRATI 94  Pelagibacterium...
WP_013672293  29 PPVLVGDRHVLAGHAaa-----------------agVRLrehvpdvppeagvLDLVDVAalpedafRPGTVSAEAGAATV 91  Pseudonocardia
WP_014161322  30 NPVLIGSVEVMGDAVriagl------------haqvRAVprasqv--thshtIDVIEPVefdmawvRYGQDVERAGWASG 95  Pseudoxanthomon...
CCA92442      47 IPVLVGSAAAVERALdmtgv------------karvRRMrsfeap-sdeagvIDVIDTGalpdgvlPLGEDTEVAGHATA 113
Q9CKG8        35 NIVLVADKDELEKGMeiakaqfvyeevsfhqlgqy-----------efktgvpvlishksshpkpfEYGKVTEQSGVYIL 103 Pasteurella mul...
WP_012073318  35 NVLLVADRDELCKGLtiaevsfeyneivpenlpny-----------sfkpgipalihhkcshpvpfEYGKATEQSGVYIL 103 Actinobacillus ...
Q92TP3        45 HIIAIGDRRILDEGArvagvtldleaasldaldn-------------agtarhvfvdlahldpadvVRGEATLAGGTFAT 111 Sinorhizobium m...
WP_015934257  43 QIVTIGDRCVIERGAavagveldlryvapgepip-------------qnsarpifvdlcnldpadiSVGTLSEPAGRSVL 109 Methylobacteriu...
Q89M19        36 RLVVIGDRRIFDEGAhvagakpdltmveqgadlr-------------saqgdalfvdlrhldprdvEPKTATLAGGKFAL 102 Bradyrhizobium ...
4JQP_A       113 QYIKRAVELAQSGKIDAICTAPLNKEALHAGGHKYPGHTEMLAHLTGV--DEVSMMLVA-PQLRVIHVTTHIGIIDAIRK 189 Paraburkholderi...
WP_014131796  95 AYVEQAVALVKKGVGRAIVAAPHSETAVNASGRRFSGYPNLLSELAGTgeDSIFLMLIG-GGLRIVHVTLHEGISGALAR 173 Pelagibacterium...
WP_013672293  92 RYVSTAVALALGGGYRGIVACPHSETAVHAAGIAFRGYPPLIAQLTGVpeDRVFLLLSG-GGLDIVHATLHERLADGLAR 170 Pseudonocardia
WP_014161322  96 AWLDHADRLARQGALAASVMGPISSGSMKMAGT--------LGSIATNrdAGAYLLLHS-GPLTIAHLSDHVPLASVSSL 166 Pseudoxanthomon...
CCA92442     114 QWLDELDGLARDGSFAATIMGPISTGSLKMAGK--------LDKVISPtpGESYLVLLT-GPLRVAHLTDHMSLRQVIDV 184
Q9CKG8       104 ETLKVALNLAKMGYVQAICFAPLNKQAMHKGGLRYRDELHWFAEQTDF--NEFVCELNvvDDIWAARVTSHIPFKDIVPN 181 Pasteurella mul...
WP_012073318 104 ETLKKTVEFAQAGYVQSICFAPLNKQAMHKGGLKYRDELHWFADQTNF--HEFVCELNvvDGIWASRVTSHIPFKDIVQN 181 Actinobacillus ...
Q92TP3       112 RNFRTALELAHAGKADAVCFTPFNKKAMRFAYPGYDDEIRFVADVLSF--TGKVREFNvlEKVWNARVTSHIPLKDVASH 189 Sinorhizobium m...
WP_015934257 110 ANFKHAIALGARGEADAVAFSPFNKASMRLAHPAYEDEIVFVSKMLGF--QGTASEFNilPELWNARVTSHVPISAVASL 187 Methylobacteriu...
Q89M19       103 TNYRHALELGRDGRVDAVCFTPFNKQAMRLARAEYDDEIAFSAEVVGL--QTPASEFNvlDRLWNARVTSHIPLRDVAAK 180 Bradyrhizobium ...
4JQP_A       190 IEPGLVQRTIERGNATLVKAGIERPRIGVCGINPHAGENGLFGYgEEEEKIIPAVTLLQER--GLDVTGPLPADTLFFRA 267 Paraburkholderi...
WP_014131796 174 LTPDLIARATLAADLALKGLGVAAPRIGLFGINPHAGEGGLFGD-EDDRIVVPALERLRAQ--GVDVHGPEGADVMLG-- 248 Pelagibacterium...
WP_013672293 171 LTPELVTAAGQALHGALRSFGVPQPRIGVMGVNPHASEGGLFGD-DDERVTVPAVAALREL--GVDAVGPTGSDVLLT-- 245 Pseudonocardia
WP_014161322 167 ITTEAVLTLLRSLDDWMKQAGLQSRRIAVAGFNPHA-E----GR-EEREQIDPAIAIARSE--GLDVAGPISPDSVFRHC 238 Pseudoxanthomon...
CCA92442     185 ITADLVAKAIGQVNDAMQSWGIARPRIAVAGLNPHA-----MGD-EDRLAIAPGVERARAS--GIAVEGPIAPDSVFRQC 256
Q9CKG8       182 LSIKGVFDCIHLLYRSLVQAGVENPKIAVQALNPHGGEGGVFGD-EEMTIIQPGMEQAR-Ka-GIDVYGPFPGDTTMREV 258 Pasteurella mul...
WP_012073318 182 LSIKNVVDCICLLHKSLTQAGVKNPKIAVQALNPHGGEGGVFGD-EEIKIITPAIELTR-KkyGINLYGPFPGDTTMREV 259 Actinobacillus ...
Q92TP3       190 LSVEAILAELKLTQACLKDAGYEEAKIAVAGLNPHAGDGGSFGM-EEIDIIEPAVEKAR-Al-GFNVEGPFPADTVFLRA 266 Sinorhizobium m...
WP_015934257 188 ITFDNVLRALRLTDQAMREGGYKAPRIAVAGLNPHAGDSGNFGR-EEIDVIGPAIAAGQ-Ag-GILCHGPLPPDTVFVRA 264 Methylobacteriu...
Q89M19       181 LSSERIHRALKLTDACMRNAGFARPRIAVAGLNPHAGDGGNFGR-EEIDMIEPVVAAGQ-Re-GIAAEGPFPADTVFLRA 257 Bradyrhizobium ...
4JQP_A       268 GRGDFDLVVAMYHDQGHGPVKVLGLEAGVNVTVGLEVIRTSVDHGTAFDIAGKGVVDEGSMLEALR 333 Paraburkholderia phymatum STM815
WP_014131796 249 -RAGYDAFVAMYHDQGHIPVKLLAGRGAAAMSIGAGLVFSSVGHGAAFDIAGKGQASPDAVVAAVR 313 Pelagibacterium halotolerans
WP_013672293 246 -TPGHDGFVAMYHDQGHVPVKLLAGRTATAMTVGAGVAFSSVGHGTAFDIAGRGVADPAAVVRALa 310 Pseudonocardia
WP_014161322 239 IEGRYDVVVAMYHDQGHIAMKTWGFSGNSVAMIGPPYIHMTVAHGVAHEIAGLGKADHTMILNAIL 304 Pseudoxanthomonas spadix
CCA92442     257 IEGRYDMVLAIFHDQGHIAVKTWGFSGNCVIMMGPPYLHMSVAHGTAYDIVGTGKADAAMMRSAMR 322
Q9CKG8       259 ERLKINGVVSMYHDQFSTALKILGFERGVTVQGGIPIPITTANHGTAFDLHGKNIAIPTAFEAAFN 324 Pasteurella multocida subsp. ...
WP_012073318 260 NRLKIDGVVSMYHDQFSTALKLLGFERGVTVQGGIPIPITTANHGTAYDLYGKNVAIPTAFEEAFN 325 Actinobacillus succinogenes
Q92TP3       267 LKEGFNAVMTMYHDQGQIAMKIIGFDKGVTMMGGLPFPLCTPAHGTAYDIAGKGIADIGATREAIL 332 Sinorhizobium meliloti 1021
WP_015934257 265 RKGEFDAVLTMYHDQGQVAMKLIGFDRGITLLAGFPFPLLTAAHGSAYDIAGKGIADPGALRAALL 330 Methylobacterium nodulans
Q89M19       258 KGGAFDAVLTMYHDQGQIAMKLMGFDRGVTLLGGFPFPICTPAHGTAYDIAGQGIASIGASRAALL 323 Bradyrhizobium japonicum
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