Conserved Protein Domain Family
Borrelia_orfX

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pfam04160: Borrelia_orfX 
Orf-X protein
This short protein has no known function and is found in Jaagsiekte sheep retrovirus. Jaagsiekte sheep retrovirus (JSRV) is the etiological agent of a contagious lung tumour of sheep known as sheep pulmonary adenomatosis. JSRV exhibits a simple genetic organisation, characteristic of the type D and type B retroviruses, with the canonical retroviral sequences gag, pro, pol and env encoding the structural proteins of the virion. An additional open reading frame (orf-x), of approximately 500 bp overlapping pol.
Statistics
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PSSM-Id: 486910
Aligned: 16 rows
Threshold Bit Score: 199.411
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9YN98     1 MQPGNPMIYITKIVILYACNLKFLVKLHGKLLNLVLLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLDVLNMFMFLL 80  Jaagsiekte sheep re...
AAF60214   1 MQPENPMIYITKIVILYACNLKFPVKLHGKLLNLALLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLGVLNMFMFLL 80 
P31624     1 MQPENPMIYITKIVILYACNLKFPVKLHGKLLNLALLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLGVLNMFMFLL 80  Jaagsiekte sheep re...
Q9XT37     1 MQPENPMIYITKIVILYACNLKFPVKLHGKVLNLALLVLNSLFFLNMVSTLEVYALITSGKQMLLTFLNLGVLNMFMSLL 80  sheep
Q9YN96     1 MQPENPMIYITKIVILYGCNLKFPVKLHGKLLNLALLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLGVLNMFMSLL 80  Endogenous sheep re...
Q9YN95     1 MQPENPMIYITKIVILYGCNLKFPVKLHGKLLNLALLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLGVLNMFMSLL 80  Endogenous sheep re...
Q9IC97     1 MQPESPMIYIIRIVILYAYNLKFPVKLHGKLLNLALLVLNSLFSLNTVSTLEDYALIISGKQMLLTFLNLDVLNMFMFLL 80  Jaagsiekte sheep re...
Q9ICA7     1 MQPESPMIYIIKIVILYACNLKFPVKLHGKLLNLALLVLNSLFSLNTVSTLEDYALITSGKQMLLTFLNLDALNMFMFLL 80  Jaagsiekte sheep re...
Q9WR72    14 MQPGNPMIYITKIVILYACNLKFLVKLHGKLLNLVLLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLDVLNMFMFLL 93  Jaagsiekte sheep re...
Q9ICA5     1 MQPGNPMIYITKIVILYACNLKFLVKLHGKLLNLVLLVLNSLFSLNMVSTLEVYALITSGKQMLLTFLNLDVLNMFMFLL 80  Jaagsiekte sheep re...
Q9YN98    81 TLFPIFSWPLFTLENQHVTVFNIYCFVFLLQESLKPLRQIMDLGILAVLFNVFVFLFKFIIKQGFLIIHRDKVL 154 Jaagsiekte sheep retrovirus
AAF60214  81 TLFPIFSWLPFTLENQHVTVFNICCFAFLLQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154
P31624    81 TLFPIFSWLPFTLENQHVTVFNICCFAFLLQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154 Jaagsiekte sheep retrovirus
Q9XT37    81 TLFPIFSWPPFTLENRHVTVFNICCFAFLLQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154 sheep
Q9YN96    81 TLFPIFSWPPFTLENRHVTVFNICCFAFLLQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154 Endogenous sheep retrovirus
Q9YN95    81 TLFPIFSWPPFTLENQHVTVFNICCFAFLLQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154 Endogenous sheep retrovirus
Q9IC97    81 TLFPIFSWPPFTLENQHATVFNICCFAFLPQESHKPLKQIMDLVILAVLFNVFVFLSKFIIKQEFLIIHRDKVL 154 Jaagsiekte sheep retrovirus
Q9ICA7    81 TLFPIFSWPPFTLENQHVTVFNICCFAFLPQESHKPLKQIMDLVILAVPFNVFVFLSKFIIKQEFXIIHRDKVL 154 Jaagsiekte sheep retrovirus
Q9WR72    94 TLFPIFSWPLFTLENLHVTVFNIYCFVFLLQESLKPLRQIMDLGILAVLFNVFVFLFKFIIKQGFLIIHRDKVL 167 Jaagsiekte sheep retrovirus
Q9ICA5    81 TLFPIFSWPLFTLENQHVTVFNIYCFVFLLQESLKPLRKIMDLGILAVLFNVFVFLFKFIIKQGFLIIHRDKVL 154 Jaagsiekte sheep retrovirus
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