5O8M,7NJC


Conserved Protein Domain Family
YTH

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pfam04146: YTH (This model is not part of the current CDD release)
YT521-B-like domain
A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily.
Statistics
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PSSM-Id: 516063
Aligned: 196 rows
Threshold Bit Score: 81.0051
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5O8M_A          8 SRYFIMLCDNETAIAHAKKTS-IWAVKKDSSKRISDAYKKA-----SVYFIFVAQQTYNALGYAQVV------SDLN-ST 74   Schizosacchar...
XP_001014017  181 KKYFIIRNRNEYFRKIAQEQS-IFLIH-KNYEKLCEAFKNSd----DVYIIFSNIDQKHFYGYATMIse---aDELRfIS 251 
A0E4N3         17 SKFFTVKYKSKAQADSSLNNKhIFIQR-KFDKLIDRAMEKSk----SVGIFLNCVDEKSFIAFGILQsqsiqfEMLTeDQ 91   Paramecium te...
A0BNI8         17 NKFFIIKYKTRGQADLSLNNQ-VIFLQKRFDQQLRNAAQVCe----QVGVFLSCLDQQSFIAFGTIQ---------NePT 82   Paramecium te...
XP_001743129  253 RKFFLLWIREARHFILGETAS-RWTLVTTVVRKLNASWKHG-----DVYFLLADHPTKQFVGAARMV------NMVHtNR 320 
XP_001487464   83 SRFFIIKSFTEKDVASSVEHG-VWTSTDLGNKRLDKAYKTTsedggKVYLFFLVNGSGRFCGIAEMT------AAVNfKS 155 
EME44839      317 TRVVNIKSEYPKNVITSIRIG-KYSVMRKVADRIMQVWDARedpaeKVIFLLSINGSKRFSGLAEMC------GPYNpDD 389 
XP_016758626  327 SVVINIKTEFFENLIASVKAS-RYSCMDKVSERIQEVYNSRsp-tqKVLFMFSVIGGKKFSGLAEMS------GPWDpSH 398 
XP_002908404   31 CRCFVLKSFSEANFHKSLKYG-IWSTTTMHNALLDQVFKSDltavrPVLFFFSVCGTKHFNGVARMT------SGVRtDA 103 
XP_001014705  133 ARFFQMKAYQWEAIKAGVLYG-TWSTSIDQNILLDQAFCEAkg-kyPIILFFSINQSKSFQGVAVMK------SRVNpQW 204  Tetrahymena t...
5O8M_A         75 El-PFWSDSSH------AGGV----RIK--WIKTCNLFSAEISEIVSHM-DHGSE---ARDGMEMMYDEGSRLCTLIN 135  Schizosaccharom...
XP_001014017  252 SqlENYQNLKNk-----GEEYimysKIQ--WSSQTPLHYDHCKNILNPW-NSNKPinfSKEFQEVEPAAALQLLELLD 321 
A0E4N3         92 K--INLSNLKGn----yESFF----KVD--WTLKGVLSYEKTQKIKNVL-NDLLPvnqGKEVEELSGSNAEEVLTYRN 156  Paramecium tetr...
A0BNI8         83 Df-EYLTEEQQqnlsklQEFFqsfvKVE--WIFKGVLNFEKTKNIKNDL-NEMKPvnhCKDVQELTCQTAEQLLSLLQ 156  Paramecium tetr...
XP_001743129  321 E----SDQQDAk------LPY----NVElaWVATHAVPFSSLEHLRNTL-NANSSmgrGKTGQEVNERSAFQLLHLMD 383 
XP_001487464  156 Kl-NIWN-ETSr----wSGVF----PIT--WVSTDSLPNRHFVQLRNPL-NENKPitySRDTQEVPFNIAFKFIAIYA 220 
EME44839      390 Ni-EDWIDAPData-psVGTI----PLT--WVYVKDIPYHQFSHIRQPH-N-DHPvgnMWNGMNFPSDTGRVVIEKFV 457 
XP_016758626  399 Fl-SDWHLNPAcp--pcTGSF----PVT--WIYVKDVWYNSFDRIRQPS-N-DHPvsnMWNGMMFTEETGRDVVRGFV 465 
XP_002908404  104 Qf-QLW--EKLk----yEGFF----QVE--WLLVKDVPNYVFTGVRMSNtPSKKSitsCRDCEEVLFEEANEFLSIFT 168 
XP_001014705  205 Rq-DVWD-DNKk----fQGLF----FIE--WIYVQHILSTEFKGILNSL-NYNKPvinQRNGQQINYEAGIQMLEVFM 269  Tetrahymena the...
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