Conserved Protein Domain Family
Vps52_CC

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pfam04129: Vps52_CC 
Vps52/Sac2 family, coiled-coil
Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex, the Golgi-associated retrograde protein (GARP) complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network, regulating membrane trafficking events. It is also part of the EARP (Endosome-Associated Recycling Protein) complex, involved in endocytic recycling. GARP complex is part of the family of evolutionarily related complexes associated with tethering containing helical rods (CATCHR), which includes the conserved oligomeric Golgi (COG), Dsl1 and exocyst complexes. They share structural features consisting of an alpha-helical bundle at the C-terminal and usually a coiled-coil (CC) region at the N-terminal. This entry represents the CC region found at the N-terminal of Vps52.
Statistics
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PSSM-Id: 486889
Aligned: 5 rows
Threshold Bit Score: 206.937
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P39904  54 AKLK--SLQETHSNNEAAINIIIPQLIDYLTEFTNRLSNYTQDLDFIKKKSNELQSLLEYNSTKLAHISPMVNDLMIPPE 131 Saccharomyces cerevis...
Q9VMQ8  49 DYIAesQNIANLHNQINDCDDVLERMENMLMSFQSVLNNISTEITQLQRKSVSMSLQLTNRQSVKAQLSQFIEDMAVSEE 128 fruit fly
O55166 101 DYIQesENIASLHNQITACDAVLERMEQMLGAFQSDLSSISCEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSA 180 Norway rat
Q94KD3  93 DYIKesDNLVSLHDQIRDCDSILSQMETLLSGFQEEIGSISSDIKILQEKSMDMGLRLKNRRVAESKLAKFVEDIIVPPK 172 thale cress
Q9UST3   8 DVYD---GSGDDLNKLDSLKSVLNDVLSSLERFQVDLDVATSDIYKVSERSNKIQVNLNNLKAVESALGAEIDGAILPPD 84  Schizosaccharomyces p...
P39904 132 LIDDIIKGKINEswqdniTFIADKEEIYNKYRSNNLDQDnkdaeNSAMLAPKDFDklcQLLDILKNVILERSKRLIISKI 211 Saccharomyces cerevis...
Q9VMQ8 129 MINIIMETPVTE------RDFSTQLNVLNHKLSLVKELS-----FKESKSTSDVS---DVLQKLRLKAMAKIRSYLLEQI 194 fruit fly
O55166 181 LVTAILEAPVTE------PRFLEQLQELDAKAAAVREQE-----ARGTAACADVR---GVLDRLRVKAVTKIREFILQKI 246 Norway rat
Q94KD3 173 MIDVIVDGEVNE------EYMKTLEILSKKLKFVEADQA-----VKSSKALKDVE---PELEKLRQKAISKVYDFIVQKL 238 thale cress
Q9UST3  85 LIKTISTGDMDH------PSWNSALEKLTSFLEGGEDDSslgnmFNSLQINKDQK---KLVDKLRDKAIERIRNYIVVTI 155 Schizosaccharomyces p...
P39904 212 KTLRSHNpVPSQRIQN-KLLKVQKIFPFI 239 Saccharomyces cerevisiae S288C
Q9VMQ8 195 YKFRKPM-TNYQIPQN-AMLKHKFFFEFI 221 fruit fly
O55166 247 YSFRKPM-TNYQIPQT-ALLKYRFFYQFL 273 Norway rat
Q94KD3 239 IALRKPK-TNIQILQQsVLLKYKYIISFL 266 thale cress
Q9UST3 156 KMFRQAF-VDVFPIRKhRLIANKNYYLFL 183 Schizosaccharomyces pombe 972h-
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