6VJA,8YWA,9C3C


Conserved Protein Domain Family
CD20

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pfam04103: CD20 (This model is not part of the current CDD release)
CD20-like family
This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulfide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton.
Statistics
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PSSM-Id: 516036
Aligned: 39 rows
Threshold Bit Score: 52.2544
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6VJA_C        14 TLGAV---QIMNGLFHIALG--GLLMIPAgiYAp-----ICVTVWYPLWGGIMYIISGSLL-AATEKNSR--KCLVKGKM 80  human
Q810P8        49 ILGTT---QILFGIMNFSFG--VIFLFTL--VNpyprfpFIFISGYPFWGSVLFINSGAFL-IALKRKTT--DTLIKMSR 118 house mouse
Q3TRE0        28 lLALL---QLALGIAVTVLG--FLMASIS--PS-------LLVRDTPFWAGIIVCVVAYLG-LFMLCVSYqvDERTCVQF 92  house mouse
XP_001633519  20 GFGVV---QVILGLSLTGLS--FAAFALS--ES------DRIRNACPYWAGFTVFFSGGVG-IVAWRHST--ILSMGLFT 83 
Q5HZJ5        36 TLGLA---QVLLGILVITFS--MVASSVT--TT------ESIKRSCPSWAGFSLAFSGLVG-IVSWKRPF--TLVISFFS 99  house mouse
Q9GYM6        45 ALANV---HVFLGIIMIVLSglADYASTR--IN------TIRLHGLEEICSFYFVLVGLVG-ICGSASYR--RGLVITYL 110 Caenorhabditis ...
XP_001626281   7 LLGIIssfHLVFGVFSVVLG--IVTFKVA--PY------FYGVFGMGVWLGAWMLITGVAGlLTASVPTN--MCRLGSFI 74 
Q5BLA7        16 VLGIL---QVACAGLCVVCG--FMDAVFR--KSt-----TLSETRAPLWAGLIMAAPGVLA-LFASQKKN--PYLVNVMI 80  zebrafish
XP_012819533  16 VLGIL---QIACAGISIVSG--FMDGAFR--REs-----TLGRTRAPLWAGLIMTIPGVLA-LFSSQKKN--PVLVNALI 80 
9C3C_n        47 fplllallqlalGVAVTVVG--FLMASVS--SS-------LLVRATPYWAGIIVCVVAYLG-LFMLCVSYqvDERTCIQF 114 rabbit
6VJA_C        81 IMNSLSLFAAISGMILSIMDILNIKISHFLkmeslnfirahtpyiniyncepaNPSEKNSPSTQYCYSIqslFLGILSVM 160 human
Q810P8       119 AMNLLSALGAAAGIILLIFGFLLDGEFICG-------------------------YSPDGMQCGVITIL---FIGILVML 170 house mouse
Q3TRE0        93 SMKVFYFLLSALGLMVCMLAVAFAAHHYSLlaqftcet--------sldscqcKLPSSEPLSRAFVYRDvtdCTSVTGTF 164 house mouse
XP_001633519  84 FFSAVCVVLHMIGTILTGEVGGLLKSVLECqfsevdqsci---ccdsimtckqSVPSYKFEGVDDCDILtglLKELMYGL 160
Q5HZJ5       100 LLSVLCVMLSMAGSVLSCKNAQLARDFRECsmegkvcvccp--piplhrpcpeWGQELKVALNSTCDEArgaLKNLLFSV 177 house mouse
Q9GYM6       111 VMCIHSIFIFVPAIITVSSFDIHFYQHECWgecdwhllat---sfpsnskcqiMCGDHVDDAMRRRMTRlgtDYRLDAGL 187 Caenorhabditis ...
XP_001626281  75 GCSLVGLVTLFVCAIIIGLGVLQHFKFESSinreyyi---------akgpnyhKEYSRPQEHFDERNQNgknGVGIYGTL 145
Q5BLA7        81 VSSVVSLFAVVIVFVYACVTLSYGEEDDEI-----------------------FHAHPVPEVRFVLSRM---VKGANCTL 134 zebrafish
XP_012819533  81 AASVFSCFTTLIVIVYASLTLGYGEDDDDIf----------------------SSPPHVIHARFILGKL---VQGANIAM 135
9C3C_n       115 SMKLLYFVLSALGLVVCVLAVAFAA-HHYSllthltce-------napdscqcKLPSSEPLSRTFVYRDvtdCTSITGTF 186 rabbit
6VJA_C       161 LIFAFFQELVIAGIVENEW 179 human
Q810P8       171 MIFSIVELFISLFSSVLGC 189 house mouse
Q3TRE0       165 KLFLIIQMVLNLVCGLVCl 183 house mouse
XP_001633519 161 CVLNIFGSLVCFIATILGC 179
Q5HZJ5       178 CGLTICAAIICTLSAIVCC 196 house mouse
Q9GYM6       188 IAAAILEFLLSIATCVVAS 206 Caenorhabditis elegans
XP_001626281 146 LALIVMDVIVNLVTIAVCK 164
Q5BLA7       135 LVACTGSLLFSSLIAYIGC 153 zebrafish
XP_012819533 136 LIASVSSLCVALCIAYMGC 154
9C3C_n       187 QVFLLVQMVLNLVCGLVCL 205 rabbit
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