4CT6


Conserved Protein Domain Family
Rcd1

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pfam04078: Rcd1 (This model is not part of the current CDD release)
Cell differentiation family, Rcd1-like
Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes. Mammalian Rcd1 is a novel transcriptional cofactor that mediates retinoic acid-induced cell differentiation.
Statistics
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PSSM-Id: 516015
Aligned: 51 rows
Threshold Bit Score: 223.616
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4CT6_B        10 WINELSSPET--RENALLELSK--------KRESVPD-LAPMLWHSFGTIAALLQEIVNIYPSIN---------PPTLTA 69  human
XP_006843443  61 VILDLQ--REenREYALRCLSSflilrredDPENYQR-AGFFLFNSCATMTILLQELVSAYWKMV---------DGSLTV 128
4_pfamImport   1 LIKHLH--GGnnRDEVLKQLNNlik---qqSSEAMRInLGFHLWNSSLTTTTLLQEVVAAYAKFE---------VSTLNM 66 
XP_009144001  43 WINDLHNEIPfvSNSALQNLVT--------HRNTYEI-LPLLLWKSPCTMAMMLQEIVKIYPHIStpv----hsrE---- 105
Q58FZ9        52 WVCDIHKPKSymSDFALHNLAY--------HRNDFEF-LPSLLWESKNTVYIMLQEVFEAYRHLAghislrlfpHP---- 118 thale cress
XP_653602     63 LIADLADIEK--RLDSLNALSV--------IADKHPD-LAIPLWYSYGTVVILLEEIVSVYPYISgkhketlavSSY--- 128
EPR79231      11 FIINRE------RFQYLEEISK--------LLLTDPE-RAQDIWCYGTMPLVLLDEVVKSYLVFD---------YKEIPE 66 
XP_013060360  15 IIRNEN------KDESLKQLRT--------ILSEKAE-CKSRIVQEFGILTVFLKDISSIYEYLT-------------LE 66 
EOB12694      19 LLKDSN------KTIHLEKLLS--------FLSKNQI-YSLLVWESNGIPILLLQEVVNPYFELG---------TQSFNE 74 
Q8SWP5        55 VVSNPK------ETSKLDELFE--------RLKKSPG-MALEIWRYDSMPIFLLQEVVAPYMILS---------TSKFDE 110 Encephalitozoon...
4CT6_B        70 --HQSNRVCNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLH-TVSKTRPFEYLRLTSLGVIGALVK-TDE---QE--- 138 human
XP_006843443 129 --RETRRLGNVLTLFQSVA-ANNETRLKFVQAFIPNFLVPLIL-FESTEEAYENIRGMSLSVIGIICQ-ERE---PD--- 197
4_pfamImport  67 --AESLQVCKALTVWQDLF---------YYAARIPHYLLPYLGmSTKVIWSLQFLRLRILEFLVALAK-FDElhgQE--- 131
XP_009144001 106 --GKPPRAYNILLLFQCIA-HYPETRGYFLKAEMPHYLFPLMD-INLTDKPIECLRLGALGVLAHMLKaPID---GA--- 175
Q58FZ9       119 --LNPLRVYNVFLLFQSMA-CHPDTSRQFLRAKMPNYFYPLMD-TGLIDKSDECMRLAALGVIAHMLKaSED---GA--- 188 thale cress
XP_653602    129 --SLIQRVCKALALLQTIA-SHPKTQHFLIGIDIIYFLTPIFA-LTQVEREIEYLRLTSLGVIGAMSK-TRD---PQ--- 197
EPR79231      67 --EEYNKAVMVLNVLQTLV-EDRLVRREFIFTDFPIFILPFLN-SRKFTRELESSRLAALGVIGTLVK-DGD---VD--- 135
XP_013060360  67 raCLPENIYTVLEIIILLT-DEDKFISYAIDSNLLLFLYPIIN-SSIRNEEIEELKYITLRIIKCILQ-------RNkie 137
EOB12694      75 --DKAKNLILVLKILEILLlEDKSIKKVFVDSCFHYYLYKYIT-IYEQAPVYENLRKLTLNVLYALLH-NSD---LH--- 144
Q8SWP5       111 --RECHRLYTVLNILQILV-SEPKIKKVFVDARFPYYIYRYLV-MSDSNSKHETLRISALGVIASLLQ-NGD---QY--- 179 Encephalitozoon...
4CT6_B       139 -VINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYIC--QTYERFSHVAMILGKMV---LQLSKEP--- 209 human
XP_006843443 198 -IIKWAVDNNIVEICRRGIQIGGELSKVIAMHIIEAILQDKSGISYICkpEADHLLKNLLETWEHMV---MVL-SVNkdh 272
4_pfamImport 132 -ILHVLLDTNLFSLCLHCIRHGDTQIQKAATLILMKILMQEDGLKYCC--AYPDDFQSLIQVLRQLVeetFTF-EIP--- 204
XP_009144001 176 -AVRFLMDNGALRYCIKAIEIGSTESKTVSVFILNKILSTNEGLQYCC--VLADRFFLIDGLLKNLLvylSSM-TNP--- 248
Q58FZ9       189 -VNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMSTDQGLYYCC--VLADRFYVIDELLKKVLfylSNM-VRP--- 261 thale cress
XP_653602    198 -IVKYLMDKEVLMICIVSIQHAAEISRVIATFILSKLFSESTALENVC--ETPQKILSIANLLCHSI---VTTVMQKrdv 271
EPR79231     136 -IINYLKDTDIVPLTLKTMDSGSEISKAISGYIFLKILQTRDGLESLT--ARFEKFMLICDVINSMItnaIKKs------ 206
XP_013060360 138 hLIEFFKNTELVPLCLRNMELGRKKTKIEASEVFYLIISVQEGLEYSC--QTYDRFMAISMILNSVLvqmETIq------ 209
EOB12694     145 -VHNQMKNTEIVPIILKSIDLGTEAVKIQSIDLFFKIVSSEDGLNYAC--QTFDRFSAINQVLNSVMyhaVQIk------ 215
Q8SWP5       180 -IHKQLKTTEVVPLLLKIVDLGSEASQLLSANIFGLIIGNDDGLNYAC--QTFDRFSAINLMFNSLAsqaVSLg------ 250 Encephalitozoon...
4CT6_B       210 SARLLKHVVRCYLRLSDNP-------RAREALRQCLPD---QLKDTTFAQVLKDDTTTKRWLAQLVKNL 268 human
XP_006843443 273 SPRLLFHIIRCYVLLCTDT-------RGFNMLIDYLPE---PITNNSFQQITEEFPVIRRMLEQLLMNT 331
4_pfamImport 205 CPQHLKYVIQCYLCISRVAredgvyeTVGNMLQ--------LIG-NTFHNIIHKDPEIPKMLNQLVRNL 264
XP_009144001 249 SPSLFNLIAGCYAKLSQKP-------RAREGLWRFPPV---MLLNGTFASLFAEDPDAVNYRKQLIRNM 307
Q58FZ9       262 PSSLFSLVTGCYVKLSQNS-------RARNGIRRYTPF---LLFDGTFSRLYAEDPVAANNRIQLLQNL 320 thale cress
XP_653602    272 NGRLVRYSLDCLNRLSTNP-------KATPQLHSVVTEykgLFKDHLLEYIVSKEPSLKPKYDEFCRNI 333
EPR79231     207 SKRILTPALQCLRKILDIK-------QVKRALKSEIPP---FLKDLQIKELLRNDANMLSVYDEIidil 265
XP_013060360 210 SPKLLELTIKIYTKLCDMP-------NAKIAFNKNRPH---MLYTESIREIVKSNPAVKAAYDEFLAil 268
EOB12694     216 SSRIIKSIIRVYLRLCDKQ-------QIRTNLSASKPD---NLSNEEIKKVIQNDPECCKMYKEFLEII 274
Q8SWP5       251 STRLIKVALRIYIRLCAKP-------HIRALLSSKKPD---GLFTDEASLLIASDGECKALFKtftnli 309 Encephalitozoon cuniculi
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