5AP8


Conserved Protein Domain Family
Ribo_biogen_C
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pfam04034: Ribo_biogen_C (This model is not part of the current CDD release)
Ribosome biogenesis protein, C-terminal
This family represents the C-terminal domain of some putative ribosome biogenesis proteins in archaea. It has also been identified in the eukaryotic protein Tsr3, which is involved in ribosomal RNA biogenesis.
Links
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Statistics
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PSSM-Id: 515983
Aligned: 161 rows
Threshold Bit Score: 116.385
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5AP8_A            36 VVLDPFAQITLSNKDkdivRRIGITIVDTSWNN------TSQSEFKNIrg-------eHRRIPILFAGNPIHYGIAYKLS 102 Saccharolob...
Q9HM46            40 LMLTRSADTVLSKNDrfiaERSGICVIEGSWNRedtfagLrf--------------pyGRRLPKLLAANPVNYGKLEKLS 105 Thermoplasm...
Q6L1K6            44 IVLTPYSEIYLNNKDsglySAYGLCILETSWNS------INDISrir--------plnARRLPLLLPVNPVNYGRPGKLS 109 Picrophilus...
EQB71867          49 LSLTPFADVFVTPADsaiiLERGISVIDGSWAR------IEGIRnlr--------mrfPRKLPLLVPANPVNFGKPGKLS 114
EQB66456          46 LVLTVSSSQYLMNSDrtliLERGITAIEGSWKQ------NNLMGetk--------fryGRILPPLLASNPVNYGKWNLLS 111
WP_011821206      42 VVLDPFSPTPISVSDrgliEKSGLCVIDGSWRR------VSSYLrrlr-------rvvGRRLPLLLAANPVNYGRPFLLS 108 Hyperthermu...
WP_011839245      64 IILDPYSNKYLGPWDhiyvEKHGIVVVDASWKK------LAPRKTIMIrg-------qhRKLPPLLPGNPINYGKPCILS 130 Staphylothe...
CBRAS:TCELL_0249  40 VVLDPFSKDVLGAWLrgevEAGGVVVVDASWKK------LHPDVFRGIrg-------ihVKLPPLLAANPVNYGKPCVLS 106
jgi:Tagg_1227     22 VVLNPFSPDYLGPWLrslvEQKGVLVLDASWKQ------LAPEKFRKLhg-------thVKLPPLLPGNPVNYGKPCMLS 88 
jgi:Igag_0053     42 ILLNPIASSYLKRSDriyiESCGIVAIDISWKQ-----------SLYLlrkalsmhtkNRVLPILIAANPINYGKPFKLS 110

5AP8_A           103 SIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYKN-KTEEDIKKIEREII 160 Saccharolobus solfataricus
Q9HM46           106 SIEAVAAALYIMGFQDDASAILSKYTWGQNFLQLNKNPLDEY-ReADPEKIPEIENAYF 163 Thermoplasma acidophilum DSM 1728
Q6L1K6           110 SVEAAAAALYILGRHDEASKILEKFSWAQTFLSVNMMPLSDYERcRTQEDIKKTEDMYF 168 Picrophilus torridus
EQB71867         115 SVEAIAAALYICGFRSSSTLVLSKFNWGMQFLKVNMEPLEEYSScSSQEDVTKAESLFF 173
EQB66456         112 SVEAISASLIITGFRDFAERILSKFSWGHSFISLNMEILEEYAKcKSEDDIKNVVDSIA 170
WP_011821206     109 SAEALAAALYIAGFRSIAEQLLSFFKWGPEFLRLNKQLLERY-EgKTSTEIVGEECRLI 166 Hyperthermus butylicus
WP_011839245     131 SIEAVAATLYITGFIEAYEKLLGLYKWMKTFHTLNNEVLEAYRRtRNYNELLETIKDYW 189 Staphylothermus marinus
CBRAS:TCELL_0249 107 SVEAVAAALYITGFKEDYVKLLGLFKWMHTFHELNKELLEEYSRaSTPAELGKVVVEYW 165
jgi:Tagg_1227     89 SIEAVAATAYITGFTDTYKKLLGLFKWMETFNDLNSELLESYAKaGSMEELINTVREYW 147
jgi:Igag_0053    111 TAEAIAASLFITGFIEEANAILNEFKWGPQFLELNRYRLERYSQaDSDEELDKIQKELF 169
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