Conserved Protein Domain Family
Phage_holin_4_2

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pfam04020: Phage_holin_4_2 
Mycobacterial 4 TMS phage holin, superfamily IV
These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.
Statistics
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PSSM-Id: 486804
Aligned: 377 rows
Threshold Bit Score: 28.8898
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011693853       3 SFILRVLINGLALGIASWIL-P--------G---LDIsTTatteavaqggvtqgtdplgvILAYLF-IGLIFGLVNALVR 69  Arthrobacte...
WP_014432129       3 GILIRWIVLAIAFGITTSLV-P--------G---IHFeGD--------------------LLTLFF-VSAVLGLLMAVLR 49  Caldilinea
WP_014441909       3 SIVVTVILSALALGATVA-LmP--------G---ISAeNGw----------------------AVLgAAIILGLLGALLR 48  Actinoplane...
Q2NEA9            12 KYVLLLFVDVVLFLVFVS-IfG--------G---ITV-PS--------------------FVVAFI-IVLLLSFFNGLLW 57  Methanospha...
WP_012956404      14 KLIIFLILEVILFFAITQ-TfG--------G---III-PD--------------------LKTAFA-IIIALSILNALLW 59  Methanobrev...
NZAGRC:Abm4_0118  38 RTIVIWIGNIIGFLIVAP-FnL--------G---LYV-NS--------------------IEMAII-VVTLVGIVNALLW 83 
WP_023991528      26 RTLVMWFGGFLGFVIIDY-LsV--------G---LYFd-D--------------------FFTAFL-AAGIVGLLNAIFW 71  Methanobact...
WP_012955179      16 rSLIVFIGNMIGIYLISI-LgL--------G---VEIs-Q--------------------TGDIFL-LVLFLGIVNAILW 61  Methanobrev...
WP_014049455       2 RVIAVWAVSTLTMLVLAG-IlPdfqlqsddGdsiTRTaFT-----------------------AAW-GAGAFGLLSALVW 56  unclassifie...
WP_015037524      21 RVVAVWAVSTLTMLILAA-LlPafalqsaeGdtfTRTaLT-----------------------AAA-AAGAFGLLGALVW 75  Streptomyces
WP_011693853      70 PIVS-LLS----LPITILTLGLFTIVINAAML-FLTSwlssYTP-VHFTIDS-------FfWTAV-LAAIIITVVSLV 132 Arthrobacter ...
WP_014432129      50 PILV-LLT----CPFVILTFGLFIFVINTLML-YITA----WIFpnsLRIDT-------F-WWAL-LASIIMGIIATV 108 Caldilinea
WP_014441909      49 PLLVrLLSrvgwAGV---VAGW--LVAQALLV-WAA-----LWLaPGVHVDG-------F-WGAF-AASWLGAVLmsi 106 Actinoplanes ...
Q2NEA9            58 PILS-YIS----LRFLVVTFGFGTFIFDGFIL-WILD----MFI-PGVSIGG-------M---SLfTIPLLIAIINSF 114 Methanosphaer...
WP_012956404      60 PTIT-YLS----LRFIVLTLGFGTFLIDGVLL-YIIS----LFI-PGVSING-------I---ALfSIPLLIGLISSM 116 Methanobrevib...
NZAGRC:Abm4_0118  84 PILT-RVF----MPFFVYTFGAASLIFNALFF-YILA----FFI-KGFEING-------P---ALfLVPFLMAAINTV 140
WP_023991528      72 PILS-RIL----LPFMVFTVGVGALLLNAFLI-WLAS----ELV-IGFTIEGpaliltpI-AMAA-VTAVLSSLltid 136 Methanobacter...
WP_012955179      62 PILT-RIA----MPFLVLTFGIGSLILNGLLLqLLAP----SF---GIEIKGaamilapL-GMAA-VTTVLSSLitin 125 Methanobrevib...
WP_014049455      57 PVLVrALLi---VPALVL--GALVFFLNGSLL-WIAL----RLI-PD----GrgdanpeT---AV-VVAAVMSAVASa 115 unclassified ...
WP_015037524      76 PLIVrALLl---VPALVL--GLLVFFLNGSLL-LVAL----WLV-PD----GrgtadpeT---AV-VVAAVMSAVASa 134 Streptomyces
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