2K6X


Conserved Protein Domain Family
Sigma70_r1_1

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pfam03979: Sigma70_r1_1 (This model is not part of the current CDD release)
Sigma-70 factor, region 1.1
Region 1.1 modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase. Region 1.1 is also involved in promoter binding
Statistics
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PSSM-Id: 515941
Aligned: 107 rows
Threshold Bit Score: 44.5359
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2K6X_A          4 MPQIERRIKKLISLG-KKKGYITYEDIdkafpPDFEGFDTNLIERIHEELEKHGINI-----------VENEPEEeeISA 71  Thermotoga mar...
CCX65883       53 TRLEKLVKQAKKKGDvLDYQEVLKTFQdm--dLEDEKYDLITAYLESKGIDVLNLEE-----------DQDDVPDldDDD 119
CDE46883        9 EKLKELLVCAKKKKNvLESQEIVEHFKdm--dLDVSKLEKIYDFLEKQGIDILRIKEekeaddillepDDADLDEeeEVe 86 
11_pfamImport   1 EKLGELMELAKKKKNvLEYQEISDFFKdf--pLEPEQMDKVFDFLEANGIDILRIQDndmdd--liisDDDDLNLseEDE 76 
WP_022068647   10 EKLVELLELAKKKKNvLEYQEINDFFKdq--nLEVDQMEKVFDFLEASGVDVLRITGndee---lildDDMDIDKldDEE 84  Blautia
10_pfamImport   4 AKLQELLALAKKKKNmLEYQEINDHFKdf--aLSPEQIDKILDFLEANHVDVLRITDddddi--liddEDNDVEVe---- 75 
12_pfamImport   2 EKLHELVEMGKKKKNvLEYKEINEVLKdm--eLDSDAMDKLYEYLEAYGIDVLRIPEgdsdd-tfllsDDDEVNLseEDE 78 
WP_007746504   89 KALKAFIKKNKKAGQ-VVYDDLEEKMAkp-fsLDADQIDKLIEKVEDAGISIVDEDGnpsekslntktNNPSKEelsaas 166 Oenococcus kit...
P52329         11 AAVAAFIKENKPKGT-VVYDDLANQLAtp-ytLDAEAMEKLIQKVEDAGISVVDENGdpsehslkkdeKEAEKAQaeDls 88  Enterococcus f...
EHM12539      433 KWVRELYTVGKDKGF-VTNQDIEETVPad--aWNSDVLEFVIENLMNLGVDLVDSTGsaagdvtagqaAARALAEskNSD 509
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