2K6X,5MWW


Conserved Protein Domain Family
Sigma70_r1_1

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pfam03979: Sigma70_r1_1 
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Sigma-70 factor, region 1.1
Region 1.1 modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase. Region 1.1 is also involved in promoter binding
Statistics
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PSSM-Id: 397881
Aligned: 139 rows
Threshold Bit Score: 29.4653
Threshold Setting Gi: 319756207
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2K6X_A          9 RRIKK-LISLGKKKGYITYEDIDKAFPpdfegFDTNLIERIHEELEKHGINIVENEP--EEEEISA 71  Thermotoga maritima
WP_014255291   10 AILKE-LIEKGKQKGMLTYKEIMDAFEei--eIDPEQIEKVYETLENLGIDVVGDIE--DEIEDIQ 70  Hungateiclostridium clariflavum
jgi:Dtox_3036   8 ENIRS-LVEKGKKQGYLTYHEIMDVLQtt--eLTPDQIDDVYEQLSGMGIDLLATEPemDEAAVKP 70  Desulfofarcimen acetoxidans ...
WP_011878770    8 EQIKE-LIEKGKKRGVLTYNEIMDTLQgt--eLSPDQIDDIYEKISAMGIEVVPLASdlEPLEVDD 70  Desulfotomaculum reducens
WP_012301627    7 NFIQD-LVEKGKQRGTLTYNEVMDSLQgf--eLTPDQIDDVYERLAGEGIEVVPEGP---DLAALE 66  Candidatus Desulforudis auda...
jgi:Adeg_1726  15 NEIEQ-LIEKGRKTGVLTYAEIMDDLQgm--dLTPEQIDEIYERLAAEGIDVVPEAQ---DLGEGE 74  Ammonifex degensii KC4
WP_013917798   16 DQVKDqLIEQGKKRSAITYKEIMEKLApf--dQDPDQIDEFFEQLQEMGIDVGNETD---EDQEMS 76  Paenibacillus mucilaginosus
5MWW_A         13 DQVKEqLTESGKKRGVLTYEEIAERMSsf--eIESDQMDEYYEFLGEQGVELISENE---ETEDle 73  Bacillus subtilis
WP_013059219   18 EQVKDqLTEIGKKRGVLTYEEIAERMAnf--eIESDQMDEYYEYLGEQGVEVMSESEanDDDADPD 81  Bacillus
WP_013074834   18 EQVKQqLVETGRKRGALTYHEIMDRLApf--eQDPDQMDEFFDYLSEQGIEVLNENE--EDLVLEE 79  Kyrpidia tusciae
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