Conserved Protein Domain Family
FapA

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pfam03961: FapA (This model is not part of the current CDD release)
Flagellar Assembly Protein A beta solenoid domain
This entry represents the C-terminal beta solenoid domain of FapA and its homologues. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Statistics
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PSSM-Id: 515929
Aligned: 90 rows
Threshold Bit Score: 72.7131
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7MSH2       283 QKIEIE-EVDIKTtGSLLggldaptsvvvkenhylkealgdgakiEAG-EVEIAGNIGSGSEIRAN-RVTISGQThQTSK 359 Wolinella succi...
WP_011878195 290 PVLNLSgDVDVKT-GNIR---------------------------FKG-NVNIMGSVETDMNVSASgNITISNIV-TRCK 339 Desulforamulus ...
WP_011987038 360 QVHEVKgDVDIST-GNIT---------------------------FVG-DVVVQGSVKEGMKVEAGnSVEIKKHV-ERAE 409 Clostridium bot...
WP_012058639 267 PIYTVE-SVNMET-CNIK---------------------------FYG-DVEVYDSVQDNMFVSAGgSLDVSQNV-NMAN 315 Clostridium
2_pfamImport   1 SLYNIQ-DVDIKS-GNIF---------------------------FAG-GVHIKGNVKEGMKVKSGnSLTIEKNV-DIST 49 
WP_011392342 372 PVLLHQgDVDLSS-GNLK---------------------------FKG-GIHITGNVTETMQVAASqDVEIGGDV-TQAT 421 Moorella thermo...
Q5KZX3       584 DKLTHQgDVDLGS-GNIR---------------------------FHG-DVDITGNVEDGMSVEAEgNITIFQNV-TRAT 633 Geobacillus kau...
Q2RLG1       227 PALIHDgNVNLSS-GNIN---------------------------FSG-DVIVTGQVEEGMAIEAGgNVYVGDTV-SRGI 276 Moorella thermo...
BAF60877     305 DVLVHNgDVGIET-GNIL---------------------------FNGsLVIVRGNVRESMTVGTTgIIEVDGIV-SGAR 355
Q24TB2       284 PAYILNqDLDLSI-GSIE---------------------------FPG-DVFISGDVHDGLHIFSEgKVEIRGSS-SRAE 333 Desulfitobacter...
Q7MSH2       360 IHAqSASIEAHKGWVEADEvkvmrleaGIIRA--QKVHIEHA-HGGKVYAKE-ISIRFLHSNLQAFASEKIEI------- 428 Wolinella succi...
WP_011878195 340 ITA-GGNVTIKGNIVNSEIisg--gfiVICNAi-KPLLSELLkTLEDLLISAnLMLEKLPTNNKILFGNILMLliekk-f 414 Desulforamulus ...
WP_011987038 410 IIS-KSNLNIDGNIIN-----------SDIYGggEDTLKVMVlNK--------LEKLKDILTELISAVEEIKRfnllgeg 469 Clostridium bot...
WP_012058639 316 VVT-GGEITILGNTIN-----------SKILSgqVDIRKKEYsDV--------LTEFKNI---LVSMIEYINGlnlq--n 370 Clostridium
2_pfamImport  50 IVA-GGEINIKGSVIK-----------STVLTgqVDMEKKMYlEK--------LNEYKDIISKLVSAVEKLNEssnn--s 107
WP_011392342 422 VNA-GGSIIVRRNCIG-----------STLVAggLNSVYQSA-EPILSDLASqLPLLQAALHQLEKGASRQRYq------ 482 Moorella thermo...
Q5KZX3       634 ITS-KQAVFIRRNVIG-----------SVISAgtGHILTSEL-AHLLITIEGyIEKMISSIKQLVSS-PAFKRtdwk--- 696 Geobacillus kau...
Q2RLG1       277 IRA-GGSIEVAGNIFV-----------SVLAAggITAFQQRL-SPLLARIAEe-------LEQLITAIKQLLRhpsfkkd 336 Moorella thermo...
BAF60877     356 VAA-YDRVHIEGNAIN-----------SIVNAglSREFLKEV------------LACIASLEKDIKKIINVMSlpafqsa 411
Q24TB2       334 IRA-EKGLTIYRNVLAGk----------------LVVGARYV-------------VRSKLLHDLQALHDDLVA------- 376 Desulfitobacter...
Q7MSH2       429 ---FEIMGEDnKFTLTPEANP-----------------------KIQSRLATLLrSFEELSAALKTkiKKFNEEAKEIka 482 Wolinella succi...
WP_011878195 415 tnfGTIIDKV-SKKLKEVDLKllg-----------------tygTLLEKALVNLtGINILNFKSSLeyQALLTDLNNFyy 476 Desulforamulus ...
WP_011987038 470 kkdGEIIK---ILIENKFKTLtkiciaimani--nmcrsddeedELVGIIRKKLiGLG-PVHIKNY--RELEQIVNLI-- 539 Clostridium bot...
WP_012058639 371 ferKDFVK---TLTEKNFGNFqkvalniisl----niknktkrsKLVDFIKGKIlGLN-ILEIKSI--YDLKTLLNIL-- 438 Clostridium
2_pfamImport 108 kkiSELVK---ILIENRYKSIpklslniith----sicedsdnnDLVSFIRSKMmGLN-LSKIESI--DDLRNLEELI-- 175
WP_011392342 483 --vRPLDTGYmVSILVENKFQklpflagkleqltkgiqggpqeqKLVQLARELAqSFRNPAAMQGLgsSILARLVNGVqe 560 Moorella thermo...
Q5KZX3       697 ----qnglFPlIKLLMDYKFR--------------------------------------PLVAVGHkyIEVTKRGDRQ-- 732 Geobacillus kau...
Q2RLG1       337 dlkGGI--GPlVLLLLEKKFQ-----------------------GLSPAIELLQkEVQNLQTISLGepEGLINDLERL-- 389 Moorella thermo...
BAF60877     412 vrkAGISYGYlLKLMIEKKLVslpa----------------ileNLDNLFKTLFlGVP----------EELEKVFIACrr 465
Q24TB2       377 ---CLMITEDfINSPHGKDLK------------------------PGQCLKLII-ERRFPGLPKQA--SDLEKFLLST-- 424 Desulfitobacter...
Q7MSH2       483 lRPLATKIKAM-------IDLNRQeGVgTPAYLQEKLKSYINLLKYT----QAHKEEIEKLQGERH-ALSEEILSLqa-- 548 Wolinella succi...
WP_011878195 477 yIESQVTSRSEihi-kvaLNSVIKsSG-DVIVTGGCFNTHILAEGSVhidgIVRGGIIQAHDDIFIqQIGSEMGTKsvvi 554 Desulforamulus ...
WP_011987038 540 -EEKIKMCKEG-------LSLPVNvNI-SYCQDSKIKSTGDIYITGK----GEYISKLTSNNNVYF-TKDDSVARGghii 605 Clostridium bot...
WP_012058639 439 -DNEIDYYDKN-------IIVPLDiRI-GYCQECEIKSTGNIIIGGK----GEYTSKLTAMKDIIF-TRSDSVARGgvls 504 Clostridium
2_pfamImport 176 -NNEIEMLEDN-------MIISADiYI-GYCQDSLIKSTGNIIITDK----GQYVSNLTALNDIIF-LRDDSVARGgvis 241
WP_011392342 561 mAAYCREIPQDgghitlsYALNSKlQA-SGQVKVTGRGCFNTEIIAGgkveIHGVFRGGSIYAGDEvYVQEMGSSGgart 639 Moorella thermo...
Q5KZX3       733 -QFHPVWFDLA------------------ERFQRCFFSSIPNELHSL----EQLAKLLEDIKTTMKqYTDVNGESS---- 785 Geobacillus kau...
Q2RLG1       390 -TRSPLAVKNL----------------------------------------DYLETMLQKVAGWQE-GISAPLQGR---- 423 Moorella thermo...
BAF60877     466 lLADPYQFISK----------------------------------------ENLCWILQSIKLAED-YFKSRKTKK---- 500
Q24TB2       425 -KDELIQQDLV-------ISVRSAkRF-LGGLGPLDSQALPLLGRVS----QAFEQIIGNITLDVPeKLECQVDYVqgal 491 Desulfitobacter...
Q7MSH2       549 pTLASyIWSKNGwkGYNEVRFKLLlppKDLFIAPKTsIHHGLLRLdeHQQSI 600 Wolinella succinogenes
WP_011878195 555 gSKDK-KIKINQ--AFDGVTIKIG---NMSRIIDRTmKNIVVLLD--EDGYL 598 Desulforamulus reducens
WP_011987038 606 aKNEIrCKEVGSe-AGVITKLQIL---QKGDIYVDVaYQNTIFIIgdREYLL 653 Clostridium botulinum
WP_012058639 505 aGQNIsLGVVGSr-AYIPTTLMVP---QYGRITAAKaYANTVFCFgrTKVTL 552 Clostridium
2_pfamImport 242 aRGNIkLGIVGSp-SGVTTRLEVL---QGGIITAKIaYSNTVFCFggRIKTL 289
WP_011392342 640 lIRVAeGKVIKAgrIWPNSTLQVG---KRVRQIDNEeNQVMAYLN--SEGDL 686 Moorella thermoacetica
Q5KZX3       786 --YIEmAYALNSt-IYCS-------------------------------GDI 803 Geobacillus kaustophilus
Q2RLG1       424 -ADVTvNYVVNSt-IMASGNIRVLgdgCYHSRLQAGkSVTINGVF--RGGEI 471 Moorella thermoacetica ATCC 39073
BAF60877     501 -ANLEiGGAINCh-IRATGDVTIRgkgCFNTVINAEgNVRINGVF--RGGEI 548
Q24TB2       492 iECAG-HFSCRKg-TYNSIIQAAGdvrIEGVCRGGRiISGGNVVIkeLGGSG 541 Desulfitobacterium hafniense Y51
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