5B88,3MOJ


Conserved Protein Domain Family
DbpA

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pfam03880: DbpA (This model is not part of the current CDD release)
DbpA RNA binding domain
This RNA binding domain is found at the C-terminus of a number of DEAD helicase proteins. It is sufficient to confer specificity for hairpin 92 of 23S rRNA, which is part of the ribosomal A-site. However, several members of this family lack specificity for 23S rRNA. These can proteins can generally be distinguished by a basic region that extends beyond this domain.
Statistics
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PSSM-Id: 515870
Aligned: 443 rows
Threshold Bit Score: 30.8079
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5B88_A        10 YRIEVGRDDGVEVRHIVGAIANEG-DISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 80  Escherichia coli K-12
WP_013455343 366 LFISGGRKDKISKGDIAGLFMKEG-KLQKEDIGVIELKLDCAFVAVNAEKAKSIVKSLDNSRLKKKKVRIKt 436 Marivirga tractuosa
CDE57539     377 MYIDGGRRRKISRGDILGFAVKDA-GIPGDKVGHISIAPDYALVAVAAEYASALGQAARLHRLKGQKVRITP 447
WP_013345264 369 LMVNAGRRARLRKGDLMGALIKAA-GVPADAIVAIELMPDHSYVTLSKRYVATALAALDGGEVKGKPVKVRP 439 Ferrimonas balearica
WP_012419505 470 LFMNGGRMIGLRPKDIAGLFYNTV-EMEKGAVGDIRIFPKHSLIEVDASVAPLLLEALATATVCGYEVNVRE 540 Akkermansia muciniphila
Q2LY23       471 LFINAGKKDGISPKRLMRDLSDAA-GMPDVRIGRIEVNNTTSLLEADSRFAPKILQALKSLTINGRYVAVEI 541 Syntrophus aciditrophic...
WP_012932581 408 LVVAGGLAQGIEPKDLIHAITSAA-GLDGESVRNIRVLEQFAFLDVPAADAARVVEQVEGTDVDGHRLRLEP 478 Conexibacter woesei
CAN93775     727 VFINLGRRDGARAADFQRALIERG-GMAKGDIRRIRVRERNAFVSVPKAELARVVATLNGATIAGKEARAEQ 797
WP_012828852 834 LYVNVGKREGLSAAQVRDLLGEGLdDDTATRIGSVALRNTHCYVRVPEDIANHVIAAAEGKSYEDRELVVER 905 Haliangium ochraceum
WP_012097339 606 IFLSLGEQDGADEARVRELLSSV---APGLEPRTIEVRRTHAFLDVAPEVIEDAVQALNGKEWGGKTLTAER 674 Anaeromyxobacter sp. Fw...
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