6CNB,4A3C,3H0G,3AYH


Conserved Protein Domain Family
RNA_pol_Rpb4

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pfam03874: RNA_pol_Rpb4 
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RNA polymerase Rpb4
This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
Statistics
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PSSM-Id: 397794
Aligned: 52 rows
Threshold Bit Score: 49.1044
Threshold Setting Gi: 74879509
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6CNB_D        10 FLSDYEVLKFLT-DLEKKhLWDQKSlaalkks---rskgkqNRPYNHPELQGITRNVVN-YLSI----------NKNFIN 74  Saccharomyces c...
Q8IM54         9 FITKFETFLVIKkELEYSrNIDKHLynkylinkddnfkeiyEKYFMKLISDKILYKSIHkYIMDtcphvipkniYHKNDN 88  Plasmodium falc...
Q18G98        12 YQTVSEVKLLLQ-NIEAErAA-----------------------EADRDLRYELARAIE-HVNR----------FADLD- 55  Haloquadratum w...
Q9HQG9        12 PLTVSEAKALLS-EVETErAL-----------------------DEDRELRFELSRAIE-HANR----------FALLE- 55  Halobacterium s...
Q5V586        12 FLTVAETKEILE-DLEMErAA-----------------------DEDREMRYELKRAIE-HVNR----------FALLD- 55  Haloarcula mari...
WP_011323550  12 YLTTPEAKELLA-DIEAErAL-----------------------DEDREMRYELARAIE-HVNR----------FALLD- 55  Natronomonas ph...
WP_011833936  11 MMTLPELREELI-AIRENrSNGE------------------EGEDTARSISYELRKSID-HADS----------LSKCS- 59  Methanocorpuscu...
Q2NE43        11 PITISEAKEILMkKVEEKvDEN--------------------NEIDGHQFTYEQNLTID-YVNK----------FALLD- 58  Methanosphaera ...
Q8U216        11 YITIAEAKELLLkRREEEvKA-----------------------GIEEPLYYEARLALE-HAER----------FAKLP- 55  Pyrococcus furi...
Q7PX59        15 TLLISEVHMLLEhRKNQNeSSEE-------------------EQ----EFSEVFHKTYT-YTNE----------FRKFRN 60  Anopheles gambi...
6CNB_D        75 QEDegeeressgakdaeksgiskmsdesFAELMTKLNSFK---L-FKAEKLQIVNQLPANMVHLYSIVEECDARFDEKTI 150 Saccharomyces c...
Q8IM54        89 ESKdii-------------------qdiSNKIVQFFKNIDiydF-DKKEKIQMIDIHCVNIVDLYVIMNYADKKCEEYKI 148 Plasmodium falc...
Q18G98        56 PSD-------------------------SRELVDELLTEEk--V-DEPTAIKIADLLPQDRDELRAVFAQERYALNGDEL 107 Haloquadratum w...
Q9HQG9        56 PAE-------------------------SREFVDELLALDv--LdDEAVAYKIVDLLPRTRTELRSVFANERYAMSGDEL 108 Halobacterium s...
Q5V586        56 PEE-------------------------SLQLVEELEELEk--V-DTPTAYKIANLRPLDRDELRAVFAQERYTLDGDEL 107 Haloarcula mari...
WP_011323550  56 VEE-------------------------AQALVEDLRELEk--V-DEATAYKVANLLPEDRDELRTVFAQERYSLSGDEL 107 Natronomonas ph...
WP_011833936  60 VET-------------------------AKSLLAILGSMEk--T-KPEIACRIVNIMPKSRDEIRAIYAKERFTLLPEDL 111 Methanocorpuscu...
Q2NE43        59 ADD-------------------------AKELRTKLEEY----L-TPVQAVKVVDLMPEDLDDLRLIFAKERGTFETDAL 108 Methanosphaera ...
Q8U216        56 ADK-------------------------AKEAVEELMNAFe--WmSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEM 108 Pyrococcus furi...
Q7PX59        61 KET-------------------------IASVRSLLMQKK---L-HKFELAALGNLCPASPEEAKALIPSLEGRFEDDEL 111 Anopheles gambi...
6CNB_D       151 EEMLEIISGYA 161 Saccharomyces cerevisiae S288C
Q8IM54       149 EQILNMLKDVH 159 Plasmodium falciparum 3D7
Q18G98       108 DAILNTVKKYA 118 Haloquadratum walsbyi DSM 16790
Q9HQG9       109 DEILDVVAKYV 119 Halobacterium salinarum
Q5V586       108 DEIINIVKQYA 118 Haloarcula marismortui
WP_011323550 108 DDILDIVAKYA 118 Natronomonas pharaonis
WP_011833936 112 DQILDTLHKFE 122 Methanocorpusculum labreanum
Q2NE43       109 KNILDLLDQYR 119 Methanosphaera stadtmanae DSM 3091
Q8U216       109 KQILDILDKYR 119 Pyrococcus furiosus
Q7PX59       112 QQILDDIGTKR 122 Anopheles gambiae str. PEST
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