3H0G,5FJ8,7AST,3AYH,8CRO


Conserved Protein Domain Family
RNA_pol_Rpb4

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pfam03874: RNA_pol_Rpb4 (This model is not part of the current CDD release)
RNA polymerase Rpb4
This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
Statistics
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PSSM-Id: 515866
Aligned: 53 rows
Threshold Bit Score: 51.4224
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H0G_D        24 MLTVSEAKILIETVLAQRaRETNG----------------------EIPMTDVMKKTVA-YFNV----------FARFKT 70  Schizosaccharom...
Q8IM54         9 FITKFETFLVIKKELEYSrNIDKHlynkylinkddnfkeiyekyfmKLISDKILYKSIHkYIMDtcphvipkniYHKNDN 88  Plasmodium falc...
Q7RDJ1         9 YITKFEAFVVIKKELEYSkNIDKYlcskliikaddpfkdiyeknfiKLVSDKILYKNLQkYIIDtnphliskelYNKDYQ 88  Plasmodium yoel...
Q18G98        12 YQTVSEVKLLLQ-NIEAErAAe-----------------------aDRDLRYELARAIE-HVNR----------FADLD- 55  Haloquadratum w...
Q9HQG9        12 PLTVSEAKALLS-EVETErALd-----------------------eDRELRFELSRAIE-HANR----------FALLE- 55  Halobacterium s...
Q5V586        12 FLTVAETKEILE-DLEMErAAd-----------------------eDREMRYELKRAIE-HVNR----------FALLD- 55  Haloarcula mari...
WP_011323550  12 YLTTPEAKELLA-DIEAErALd-----------------------eDREMRYELARAIE-HVNR----------FALLD- 55  Natronomonas ph...
Q2NE43        11 PITISEAKEILMKKVEEKvDENne--------------------idGHQFTYEQNLTID-YVNK----------FALLD- 58  Methanosphaera ...
Q8U216        11 YITIAEAKELLLKRREEEvKAg-----------------------iEEPLYYEARLALE-HAER----------FAKLP- 55  Pyrococcus furi...
8CRO_F        11 YITIAEAKELLLKRREEEvKAGi-----------------------EEPLYYEARLALE-HAER----------FAKLPA 56  Pyrococcus furi...
3H0G_D        71 AEA------TYACERILGN-R---F-H-KFERAQLGTLCCEDAEEARTLIPSLAN------------------------- 113 Schizosaccharom...
Q8IM54        89 ESKdiiqdiSNKIVQFFKNiDiydF-D-KKEKIQMIDIHCVNIVDLYVIMNYADK------------------------- 141 Plasmodium falc...
Q7RDJ1        89 EIKhliddtFNKIVNFFKNiSiynI-D-KKEKIQMIDIKCINFIDLYVIMDYDDKkyaqiflfhiqkiitfislcnclrn 166 Plasmodium yoel...
Q18G98        56 PSD------SRELVDELLTeEk--V-D-EPTAIKIADLLPQDRDELRAVFAQERY------------------------- 100 Haloquadratum w...
Q9HQG9        56 PAE------SREFVDELLAlDv--LdD-EAVAYKIVDLLPRTRTELRSVFANERY------------------------- 101 Halobacterium s...
Q5V586        56 PEE------SLQLVEELEElEk--V-D-TPTAYKIANLRPLDRDELRAVFAQERY------------------------- 100 Haloarcula mari...
WP_011323550  56 VEE------AQALVEDLRElEk--V-D-EATAYKVANLLPEDRDELRTVFAQERY------------------------- 100 Natronomonas ph...
Q2NE43        59 ADD------AKELRTKLEEy----L-T-PVQAVKVVDLMPEDLDDLRLIFAKERG------------------------- 101 Methanosphaera ...
Q8U216        56 ADK------AKEAVEELMNaFe--WmS-DRIACKIVDIMPEDSMDLRVIFAKEEY------------------------- 101 Pyrococcus furi...
8CRO_F        57 DKA------KEAVEELMNAfE---W-MsDRIACKIVDIMPEDSMDLRVIFAKEEY------------------------- 101 Pyrococcus furi...
3H0G_D       114 -----------KIDDQNLQGILDELSTLR 131 Schizosaccharomyces pombe 972h-
Q8IM54       142 -----------KCEEYKIEQILNMLKDVH 159 Plasmodium falciparum 3D7
Q7RDJ1       167 gthiliiffsfRCEESKIEHILNLLKDVH 195 Plasmodium yoelii yoelii
Q18G98       101 -----------ALNGDELDAILNTVKKYA 118 Haloquadratum walsbyi DSM 16790
Q9HQG9       102 -----------AMSGDELDEILDVVAKYV 119 Halobacterium salinarum
Q5V586       101 -----------TLDGDELDEIINIVKQYA 118 Haloarcula marismortui
WP_011323550 101 -----------SLSGDELDDILDIVAKYA 118 Natronomonas pharaonis
Q2NE43       102 -----------TFETDALKNILDLLDQYR 119 Methanosphaera stadtmanae DSM 3091
Q8U216       102 -----------QPTQEEMKQILDILDKYR 119 Pyrococcus furiosus
8CRO_F       102 -----------QPTQEEMKQILDILDKYR 119 Pyrococcus furiosus DSM 3638
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