3AYH,4A3C,3H0G,6CNB


Conserved Protein Domain Family
RNA_pol_Rpb4

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pfam03874: RNA_pol_Rpb4 
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RNA polymerase Rpb4
This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
Statistics
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PSSM-Id: 427559
Aligned: 50 rows
Threshold Bit Score: 51.0385
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3AYH_A        17 YLTNAEVFFHLK-EMENEqNARTQer-------------gAAQALVCENLRTIQFEILK-YLSSq--------gNCEGLT 73  Schizosaccharom...
Q8IM54         9 FITKFETFLVIKkELEYSrNIDKHlynkylinkddnfkeiYEKYFMKLISDKILYKSIHkYIMDtcphvipkniYHKNDN 88  Plasmodium falc...
Q18G98        12 YQTVSEVKLLLQ-NIEAErAA-----------------------EADRDLRYELARAIE-HVNR----------FADLD- 55  Haloquadratum w...
Q9HQG9        12 PLTVSEAKALLS-EVETErAL-----------------------DEDRELRFELSRAIE-HANR----------FALLE- 55  Halobacterium s...
Q5V586        12 FLTVAETKEILE-DLEMErAA-----------------------DEDREMRYELKRAIE-HVNR----------FALLD- 55  Haloarcula mari...
WP_011323550  12 YLTTPEAKELLA-DIEAErAL-----------------------DEDREMRYELARAIE-HVNR----------FALLD- 55  Natronomonas ph...
Q2NE43        11 PITISEAKEILMkKVEEKvDEN--------------------NEIDGHQFTYEQNLTID-YVNK----------FALLD- 58  Methanosphaera ...
Q8U216        11 YITIAEAKELLLkRREEEvKA-----------------------GIEEPLYYEARLALE-HAER----------FAKLP- 55  Pyrococcus furi...
WP_011833936  11 MMTLPELREELI-AIRENrSNGE------------------EGEDTARSISYELRKSID-HADS----------LSKCS- 59  Methanocorpuscu...
Q7PX59        15 TLLISEVHMLLEhRKNQNeSSEE-------------------EQ----EFSEVFHKTYT-YTNE----------FRKFRN 60  Anopheles gambi...
3AYH_A        74 KER------FLDCIAIFNEFE---L-TKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTTF 135 Schizosaccharomyces pom...
Q8IM54        89 ESKdiiqdiSNKIVQFFKNIDiydF-DKKEKIQMIDIHCVNIVDLYVIMNYADKKCEEYKIEQILNMLKDVH 159 Plasmodium falciparum 3D7
Q18G98        56 PSD------SRELVDELLTEEk--V-DEPTAIKIADLLPQDRDELRAVFAQERYALNGDELDAILNTVKKYA 118 Haloquadratum walsbyi D...
Q9HQG9        56 PAE------SREFVDELLALDv--LdDEAVAYKIVDLLPRTRTELRSVFANERYAMSGDELDEILDVVAKYV 119 Halobacterium salinarum
Q5V586        56 PEE------SLQLVEELEELEk--V-DTPTAYKIANLRPLDRDELRAVFAQERYTLDGDELDEIINIVKQYA 118 Haloarcula marismortui
WP_011323550  56 VEE------AQALVEDLRELEk--V-DEATAYKVANLLPEDRDELRTVFAQERYSLSGDELDDILDIVAKYA 118 Natronomonas pharaonis
Q2NE43        59 ADD------AKELRTKLEEY----L-TPVQAVKVVDLMPEDLDDLRLIFAKERGTFETDALKNILDLLDQYR 119 Methanosphaera stadtman...
Q8U216        56 ADK------AKEAVEELMNAFe--WmSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYR 119 Pyrococcus furiosus
WP_011833936  60 VET------AKSLLAILGSMEk--T-KPEIACRIVNIMPKSRDEIRAIYAKERFTLLPEDLDQILDTLHKFE 122 Methanocorpusculum labr...
Q7PX59        61 KET------IASVRSLLMQKK---L-HKFELAALGNLCPASPEEAKALIPSLEGRFEDDELQQILDDIGTKR 122 Anopheles gambiae str. ...
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