Conserved Protein Domain Family
Phage_cap_E

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pfam03864: Phage_cap_E 
Phage major capsid protein E
Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.
Statistics
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PSSM-Id: 397785
Aligned: 65 rows
Threshold Bit Score: 168.312
Threshold Setting Gi: 558535609
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDD64880         9 FTARSLGVMWNNYQkTLgsAPYLGRQKFGTR---KQDSLDLRFIKGKSGLPVSLKASNfDAQAELRDVGGFSDIQNEMPF 85  Firmicutes ba...
jgi:Thivi_3531   8 FEPRALARMIEIRK-RP--KLWYADTYFKPAe-gVHGARLVELDVLIGGQRLAPLQRP-TDRSREMPRETGSDRLIRLPY 82  Thiocystis vi...
Q727I6           4 FDFRYLTEAVQVMP-GQ--PGLLQKILFRERi--SNPAKILQFDADRFKNKVVPYTSA-VKGGTILENTRRSTSFLQFPK 77  Desulfovibrio...
CCK81203        12 vQTRTIEQIITP-------PRMLQDLVFNQRn--TNESDTIEVDIEKGGKKLAPFVTD-LEGGKIVKGTTRQAKMVKTPR 81  Desulfobacula...
Q72A29          10 FEARTLTGIITVRP-WF--NSLFLSLFFPESrrnTLLTDTAAVELEMYGKELAPFVTD-YEGGTLVENTKREVQAIKTTR 85  Desulfovibrio...
Q2SI52           3 YETSTLLSVMQEMD-RN--IPFLLSLFFTEEi--MFDTDEIDFDAIDEDVRIAPFVSP-LVAGQVMKERGSTLKKFKAAY 76  Hahella cheju...
Q8ZMZ8           4 FTTRQLLGYTEQKV-KF--NPLFLSLFFRRTv--TFPTQEVMLDKITGKTPIAAYVSP-VVGGKVLRNRGGETRVLRPGY 77  Salmonella en...
P03713           4 YTTAQLLAANEQKF-KF--DPLFLRLFFRESy--PFTTEKVYLSQIPGLVNMALYVSP-IVSGEVIRSRGGSTSEFTPGY 77  Escherichia v...
BAH39297         2 YDTAELSQTINSLI-SL--QNGLHKMFFSNVk--THKTETVVFDVKTKRRVTARYVHP-RSPGKPRQLTGFRTDSFQPAY 75  Gemmatimonas ...
hku:LHK_01651    4 FATAVLAHVVANLK-RP--KLFLLNSYFGQEq--RETTEEIHFEVEHGRRRIAPFVSP-LRAGQIVTSDGRTVTSLKPAY 77  Laribacter ho...
CDD64880        86 YRESYMVTEKEeqeYDNYRSAEN----------SNLAnqVLREISKKPMNLIEGARVVPERQIWSLLApeDGVPKI---- 151 Firmicutes ba...
jgi:Thivi_3531  83 MKPARPTNAEE---IIRRRAVGAhlya---erdLIGA--AQRQLGRDIEDLDDMIERRREYMAAQTLV--TGTTPLigld 152 Thiocystis vi...
Q727I6          78 LRPKKQLDPEK---IL--ARPSGmapyvaggqsLEQA--AQKNLAVELQDLRRRLDLTVEKACADVL---QGALTI---- 143 Desulfovibrio...
CCK81203        82 IRLKHPMPAKD---LLGQKGPGQiyyag-gitdIMTA--KKKKIATEQKNLKNQIFNRTEWMCAQAL---TGTMSV---- 148 Desulfobacula...
Q72A29          86 MRPKKQFRAAD---LLKAPQLGRdpyn---pgaPRDR--ILEAVTRELDDLKDRITKSLEWMAAQAMQ--GGI------- 148 Desulfovibrio...
Q2SI52          77 IKPKTPVLPNR---PLK-RRAGEpigg---tltPAQR--MNAIRADILNSQMDSIDRRMEWMAASALR--TGQIIV---- 141 Hahella cheju...
Q8ZMZ8          78 VKPKHEVNYAQ---VVE-RLPGEdpar---lndPAYR--RLRILTDNLKQEEKAIVQVEEMQAVSAVL--NGKYTM---- 142 Salmonella en...
P03713          78 VKPKHEVNPQM---TLR-RLPDEdpqn---ladPAYR--RRRIIMQNMRDEELAIAQVEEMQAVSAVL--KGKYTM---- 142 Escherichia v...
BAH39297        76 IKELTAFDPDR---AFK-RMAGEslmg---tmsPQER--VDAAIVEELTEHRDVIDRTLERQAVEGLR--DAKVII---- 140 Gemmatimonas ...
hku:LHK_01651   78 IKDKRQFDANA---PMR-RAVGEkigg---alsPEQR--MQANLARDLLDQVSMVDRRLEWMAAQAML--HGRYVI---- 142 Laribacter ho...
CDD64880       152 -DVVIgKSKY-----TVEYTADSGAahkadhFVEISGSSDkwn-vpATATPLADLIKTRRDFaKKTGYSLTRFSMNTETW 224 Firmicutes ba...
jgi:Thivi_3531 153 eNGVQ-TITA-----EVVWGVPAAHl-----I-TLTSTALwth-adS--DPLAKLKTWANLIiAGSGTAPTTATVGTAVA 217 Thiocystis vi...
Q727I6         144 -PELG-L-AY-------DFGMPAEHk-----V-TLTGTAKwsd-tgS--DPNADLEAWTKKTkDATGYAPDVLILGTTAC 204 Desulfovibrio...
CCK81203       149 -TQDN-V-AF-----QVDYLMPAAHk-----I-VLAGTDKwsd-taS--KPRKQIKTWAQMIiNALGFGPTIMICGTDAA 211 Desulfobacula...
Q72A29         149 ------VISQdniqrQIDFLIPASNk-----V-TLTGTDRwte-saS--DPSGDFEEWNALV-QESGFPANVCVMGDKAW 212 Desulfovibrio...
Q2SI52         142 -SGEK-YPTS-----VVDFGRDPNLt-----VDVSGGAAAwdq-stS--TPKEDLEDIFALM----KAPCNYVIGGRGAI 202 Hahella cheju...
Q8ZMZ8         143 -QGEQ-FDTV-----EVDFGRSAGNn-----I-IQATGKKwseqdrETFDPTYDLDMYc----DQASGLINIAVMDGKVW 205 Salmonella en...
P03713         143 -TGEA-FDPV-----EVDMGRSEENn-----I-TQSGGTEwskrdkSTYDPTDDIEAYa----LNASGVVNIIVFDPKGW 205 Escherichia v...
BAH39297       141 -SGED-YPTV-----EVDFGRDEDLskaentL---TGGDRwgqtatA--DPLKTLRGRSRKLvQLSGSAGRHVVLESAGY 208 Gemmatimonas ...
hku:LHK_01651  143 -KGEG-YPEK-----MIDFQRSPKLr-----I-VKGQGARwtd-anV--NPLDDLQDWALLAaQESGVYTSEVTMDPAAW 206 Laribacter ho...
CDD64880       225 EMVLNAEDTKKQVLGITaynggirlQQS-QVVEYLRGYG------IEIEVYDKIYIdpADGKTKYFIPTGIVsaqsAGVY 297 Firmicutes ba...
jgi:Thivi_3531 218 EALFKHAKLLELMDNRRveag-qleLRE-QSMDGITYLGrf--rgVDFYEDARTYTdd-sgTAQPFTPVDRLvlgsRN-A 291 Thiocystis vi...
Q727I6         205 NAFLSHAKVKERLDLRRvegg-llaPDF-----AADFKGyy--ggLQVYTYGGSFFda-tdTAREIWPANKValfsSK-A 274 Desulfovibrio...
CCK81203       212 ASLGDRLEEDKAFDVRRisag-eftWKA-----TSNYMGnl--ggIDVYSYGSAYEdd-sgVDQSLIPANKIyliaTQ-A 281 Desulfobacula...
Q72A29         213 TAFRKNPAIKEELDNKRielg-qlgPNV-----QRMYKGrv--ngIDIYHCGTTYTd-GAGVSQKLLAPNKVlftsTE-L 282 Desulfovibrio...
Q2SI52         203 NAFMKHADIKELMETRRgsst-qleTAP--TVNLADYKGrlgsagPEVWSYQGYYTde-sgTQQLYIPDDEIilvsMA-V 277 Hahella cheju...
Q8ZMZ8         206 RLLNGFKLFREKLDTRRgsns-qleTAVkDLGAVVSFKGyy--gdLAIVVAKTSYVad-ngTEKRYLPEGTLvlgnTA-A 280 Salmonella en...
P03713         206 ALFRSFKAVKEKLDTRRgsns-eleTAVkDLGKAVSYKGmy--gdVAIVVYSGQYVen--gVKKNFLPDNTMvlgnTQ-A 279 Escherichia v...
BAH39297       209 DAFRSIPRIDDIFDTKDikvg-dlnFNE-AQTEGLIYRGka--dgFFFYTYDAWFEde-ngEDQPALAEGEAlmlgA--V 281 Gemmatimonas ...
hku:LHK_01651  207 KAFRSNPHVEKRWTSLNgnin-gltPAA--AGDGGKFMGsi--dgFDIYTYADWFVdpddnTEKPFLPAGSVllssTSGL 281 Laribacter ho...
CDD64880       298 LGDYVFGKTPeERSGSLTdgnlsIVETGiavyTYA-----TNHPINTHCVVSMIGLPTFEGMDSVVVIK 361 Firmicutes bacterium CAG...
jgi:Thivi_3531 292 ENRWHYGPI-----SDLKc---pNPLTP----RWVktwevEE-PSQRKVAVHSAPLCALHQADSIVSAK 347 Thiocystis violascens DS...
Q727I6         275 RAVLEFGLI-----EDLDag-pgGVQAE----FFSkmwteRD-PSVLWLLGETDPLPVTYEPASIVTAV 332 Desulfovibrio vulgaris s...
CCK81203       282 RFTIEFGLI-----LDLKag--aQVVGE----LFSkawmkED-PSALWVLAESRPLPVPWQPEAVIEVT 338 Desulfobacula toluolica ...
Q72A29         283 PTSLDFGLPAdLECSGPVe-------------IFSkskmeDD-PSGLFLLAESRPMPWPKIPNGIVIAT 337 Desulfovibrio vulgaris s...
Q2SI52         278 EGVQAFGAI-----LDGEa---gYMPAR----YFPknwpeKD-PPLEYLMTQSSPLTVPKRINGTAKIK 333 Hahella chejuensis KCTC ...
Q8ZMZ8         281 EGIRCYGAI-----QDSQalaegIVAAT----RYPkhwltVGDPANEYTMTQSAPLMVLPDPDEFVIVT 340 Salmonella enterica subs...
P03713         280 RGLRTYGCI-----QDADaqregINASA----RYPknwvtTGDPAREFTMIQSAPLMLLADPDEFVSVQ 339 Escherichia virus Lambda
BAH39297       282 EGTTHYGAI-----KDFEa---qFEPMP----IFTkmkteWN-PSSLQVLSQSSPLVVPVRTNATCAMQ 337 Gemmatimonas aurantiaca ...
hku:LHK_01651  282 EGYRAFGAI-----RDEKa---gYQALP----YFSkswveED-PAVRWLLMQSAPLVVPYRINASVSAT 337 Laribacter hongkongensis...
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