5AN6


Conserved Protein Domain Family
Csm2_III-A

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pfam03750: Csm2_III-A (This model is not part of the current CDD release)
Csm2 Type III-A
Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.
Statistics
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PSSM-Id: 515782
Aligned: 21 rows
Threshold Bit Score: 96.5899
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5AN6_A         6 EDLKDLVRKAEEIG-RELs-gK-----LKTNQLRKFHGHLTKIWSNYiykkkdyrdnpekfnEEILNELHFMKIFLAYQV 78  Thermotoga mari...
O27153        29 KKYADTGGYADVIArA-----Nn----LKTTQLRKFFSAIRSMEKKAdswk------------sieADFYLLKPQLANAR 87  Methanothermoba...
WP_011698210  55 LDPSLVDARAASWA-SSF---Rd----LKSTQMRRFYDEFKAIERKIlrgkve---eqvanfERDMALVMMFKAKAVYAE 123 Syntrophobacter...
WP_012174171  49 LKPELLDDQARTDA-ENF---Kg----LKATQMRRFYDDLKAIERKImsgdlq---eqqanfERDRALIVMFKAKAVYAE 117 Desulfosudis ol...
CDD66312      14 KVILELCKRTNTRG-EQI---Dl----VTTSQIRNLLAMTADIYNDVinlls------dkltKEIISKINYLKIRFVYES 79 
CCX73460      14 IAIKEIREAKNKYG-KPI---Kp----LTTSQIRNILAVTADIYNEImnqteg---tsdelsKDVCARINYLKVRLVYES 82 
CDB29559      33 evPENYVEQAENVM-YDLrnrRs----ITTTKIRNLFSLVVDICSEEelrte------stlqDKSVARLKRMHVRVIYES 101
CDC18597      14 LSKTNYVEIAEERI-KGLdkdSkgvilIKTNKIRNILSLMNELYAMIkkdrn------eklsVETQSHVQYVRMKLAYEA 86 
Q3AA77        37 PKGELLISSAEKLG-SFLarvAk----MTTSQIRNLYTEAKSINYKD---------------SDGPYRVNLLRAKFAYIA 96  Carboxydothermu...
WP_011994542  41 SVYNQLNTYAHDIG-KELs--------LNSSKLRKFYNHIKKLEMEIsd------------hNSIVRKLNKFIAIMMYDV 99  Fervidobacteriu...
5AN6_A        79 GRDi-EGISELKEI--LEPLIDEIKTPD-----E-FEK----FKKFYDAILAYHKFHS 123 Thermotoga maritima MSB8
O27153        88 GRD--LIPEGFYEV--MKKMMDKVDRGDddekiEnFRV----FVRFLESIVAYHKFYN 137 Methanothermobacter thermautotrophicu...
WP_011698210 124 KRK--VSPREFTQF--IFDHMASIKDL------KdFQA----FIKVFEAVVAFHRFYA 167 Syntrophobacter fumaroxidans
WP_012174171 118 KRK--VAPRAFTQF--IFDHVASIKDL------AdFKG----FLKVFEAVVAFHKFYS 161 Desulfosudis oleivorans
CDD66312      80 GRErnENVKKLVKQaqILECIDEIKDSR-----QnYIL----FSHYIEALVAYRKYYG 128
CCX73460      83 GRD--EKVKVFVEKahLLQLLESVKGNK-----RaYLL----FSRYMEALVAYHRFYG 129
CDB29559     102 GRD--SGTKEFVEKtkLLEYLKWIGNDR-----KrLIR----FTRYMEALVAFHRYFG 148
CDC18597      87 GRD--ANVKKFLNDvrLIGYLKIVKDSR-----AkLLL----ICNYTEALVAYHKYYT 133
Q3AA77        97 GRy--SQVRDLQKI--ADKALAQIDSY------EkFKR----FIDFFEAVVAYHRAYG 140 Carboxydothermus hydrogenoformans Z-2901
WP_011994542 100 GREnnEELKNFALG--MKKLVDLVKSSNe----HeIKKfyniFLDFFESLVAYHRYYH 151 Fervidobacterium nodosum
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