3H1C


Conserved Protein Domain Family
PNPase

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pfam03726: PNPase 
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Polyribonucleotide nucleotidyltransferase, RNA binding domain
This family contains the RNA binding domain of Polyribonucleotide nucleotidyltransferase (PNPase) PNPase is involved in mRNA degradation in a 3'-5' direction.
Statistics
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PSSM-Id: 397682
Aligned: 17 rows
Threshold Bit Score: 84.6472
Threshold Setting Gi: 81670191
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H1C_K 241 AlNARVAALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLL---AEd------eTLDENELGEILHAIEKNVVRSRV 309  Escherichia coli
O83856 240 G-RDRIYELAYPRLAQALYA--QGKGERRSACDAVKRDVAQQYAaqlEN--------DVQRRLFDALFHEMEYEILRLNI 308  Treponema pallidum s...
O66593 241 DiLKALEEECTPKILEAFNI--KDKKERYSTLDKIVEEFIEAHQi-----------pEELHFAVKYFYKKLESRLMREKV 307  Aquifex aeolicus VF5
Q9S7G6 288 KtLEKVADLAATRIESVFTDpsYGKFERGEALDNIGKDVRKVFE---EEg------dQESLSILPKAVDTVRKKVVRSRM 358  thale cress
P50849 241 ElNEKVKALAEEDLLKAIQV--HEKHAREDAINEVKNAVVAKFEd--EEh------dEDTIKQVKQILSKLVKNEVRRLI 310  Bacillus subtilis su...
P57454 241 TlELKIINSFEKNISDAYVI--FNKQDRIEKLNSIKENIIKLFL---DEn------sNIDTLEIEDIFQKIEKKVVRKRI 309  Buchnera aphidicola ...
Q9HV59 241 VlVNAIKAELGEAISQAYTI--TIKQDRYNRLGELRDQAVALFAg--EEe------gKFPASEVKDVFGLLEYRTVRENI 310  Pseudomonas aerugino...
Q88DW0 242 ElFNAIRAEFGEAVSQGYTI--TVKADRYARLGELRDQAVAKFS---GEe------gQPSASEVKEIFGEIEYRTVRENI 310  Pseudomonas putida K...
P72659 239 AvEEFIANRASKKIITVLGQfdLGKDGRDAALDEIKATEVETAIaelPEtdpvkqsvEEDPKLVGNLYKALTKKLMRKQI 318  Synechocystis sp. PC...
Q97I45 239 EiEKDVTEFAFESIKEIMYI--TDRDERNLRLREIKEKISNEFAek----------yPDDGADIDEVVYTLQKKVVRNML 306  Clostridium acetobut...
3H1C_K 310 LAGEPRIDGRE 320  Escherichia coli
O83856 309 LDRGLRIDGRA 319  Treponema pallidum subsp. pallidum str. Nichols
O66593 308 LKEGVRIDGRK 318  Aquifex aeolicus VF5
Q9S7G6 359 ISDGFRVDGRH 369  thale cress
P50849 311 TEEKVRPDGRG 321  Bacillus subtilis subsp. subtilis str. 168
P57454 310 LSNQTRIDGRE 320  Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Q9HV59 311 VNGKPRIDGRD 321  Pseudomonas aeruginosa PAO1
Q88DW0 311 VNGKPRIDGRD 321  Pseudomonas putida KT2440
P72659 319 VDDGVRVDGRK 329  Synechocystis sp. PCC 6803 substr. Kazusa
Q97I45 307 LKEHRRPDGRR 317  Clostridium acetobutylicum ATCC 824
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