Conserved Protein Domain Family
TAF10

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pfam03540: TAF10 (This model is not part of the current CDD release)
Transcription initiation factor TFIID 23-30kDa subunit
Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID is a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability. This entry represents one of the TAFs, TAF10. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. TAF10 is part of other transcription regulatory multiprotein complexes (e.g., SAGA, TBP-free TAF-containing complex [TFTC], STAGA, and PCAF/GCN5). Several TAFs interact via histone-fold motifs. The histone fold (HFD) is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. The minimal HFD contains three alpha-helices linked by two loops. The HFD is found in core histones, TAFs and many other transcription factors. Five HF-containing TAF pairs have been described in TFIID: TAF6-TAF9, TAF4-TAF12, TAF11-TAF13, TAF8-TAF10 and TAF3-TAF10.
Statistics
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PSSM-Id: 515651
Aligned: 55 rows
Threshold Bit Score: 96.8187
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_009159720 111 LREFLSKMDDYAPIIPDAVTAHYLTLSGLPppsQSDPTgastnttplpLARLLALATQKFIADIAADAYQYSRIRSSNSa 190
EJW87275      63 LRDFVNDLDNYVPTIPDAVTIHYMKKCGVD---CADSR----------VIRLFSLAAQKFTSDIILDAMQQARMKGLGQt 129
XP_001580746  13 IENFMIKLQDYPSPIPDSVIKHICAESGLN---TTDAR----------VTSAISVVTQKFISEVLRNCSDFAKARAAQEn 79 
XP_001302132  12 IEQFLQKLEDYPPPIPDSVIKQILSECGMH---TNDIR----------VSHIMNVVCQKFMSDVMTKCCECAKLRAKED- 77 
7_pfamImport   1 FNKINEGLDSFIPLIPDVVLDHCFTKAGLT---TEDPK----------IKKLVSLIAQKLITDVATCAYQYHKIAKRASl 67 
EEQ81515      12 FEEFKQNLDEYIPLIPDSVLDYYMQKSGVT---SSDTN----------VKKLVSLLSHKFISDVCASSFQYHKLRQKNAq 78 
Q8SU50        31 FNELKQNLDSYTPLLPESVTDYFMEKAGVV---TSDQS----------VKKLVSLLAHKFVTDIAVSSFQYHRINQKAAq 97  Encephalitozoon...
EJW01939      11 LQELEEALSKYVPLIPEPIIDYFLTKAGIS---YADQN----------VKKYISLIMQKFLTDVSISAFQYHKVIQKAVq 77 
EPR79980       7 IEKIKEEIPKFSHLIPEEVIDYFLEKAGVD---TADPD----------VKKTIALLGQKFLTDVAESSFQFHKLNQKATq 73 
EDQ31187       6 QNELKSKLDNYTPLLPDSVIDYFLEKNGIN---TKNEN----------VKKLISLMAHKFLTDVALNAFQFHKIHLKARl 72 
XP_009159720 191 aannplgnaglgvgggpaapgaggvgalgkgqqatqlgvqrsgyggggqggSSQgKTVLTMEDLGMAVQEYGVNVKRSEF 270
EJW87275     130 kk-----------------------------------------------gtKET-RYTLTSELLEPVLAEYGIELKRPPY 161
XP_001580746  80 p-------------------------------------------------gKIR-KLDLQFSDLKQALAKRGIHVNRPEF 109
XP_001302132  78 ---------------------------------------------------KKKkKLDIQVSDLKAALETRGIHVNRPEF 106
7_pfamImport  68 kek---------------------------------------------ktpKEK-KLTLTLSDVENALKECGISISRPSY 101
EEQ81515      79 kdk---------------------------------------------rfsRDK-KASLQVVDVEKALEEIGINISRPHY 112
Q8SU50        98 kdk---------------------------------------------rfaKEK-KPTFQLVDLEKALEEVGISISRPHY 131 Encephalitozoon...
EJW01939      78 kdk---------------------------------------------rfaKEK-KITFQVADLEKALEEMGIDIQRQFY 111
EPR79980      74 kdk---------------------------------------------rfaKEK-RPTLQMVDLEKALEEQGIDISRPHI 107
EDQ31187      73 kdk---------------------------------------------rfaKEK-KITLQVVDLEKALEEMGINISRPYY 106
XP_009159720 271 Y 271
EJW87275     162 F 162
XP_001580746 110 I 110
XP_001302132 107 I 107
7_pfamImport 102 F 102
EEQ81515     113 Y 113
Q8SU50       132 Y 132 Encephalitozoon cuniculi
EJW01939     112 Y 112
EPR79980     108 Y 108
EDQ31187     107 Y 107
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