6OJB


Conserved Protein Domain Family
Glyco_hydro_114

?
pfam03537: Glyco_hydro_114 
Click on image for an interactive view with Cn3D
Glycoside-hydrolase family GH114
This family is recognized as a glycosyl-hydrolase family, number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare enzyme. It is proposed to be TIM-barrel, the most common structure amongst the catalytic domains of glycosyl-hydrolases.
Statistics
?
PSSM-Id: 427357
Aligned: 152 rows
Threshold Bit Score: 77.7131
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6OJB_A             59 WQ--IELLyalndtsVD-AEIYD---IDLF----IND-----KSTIAG--LQRAG--RKVICYFSAGSYENWRP-----D 114  Aspergill...
bbmufp:Hsero_4248  57 FY--YGVnp-----pLAdLQAFDvavVEPEfvrnPAArtraaADGMH-----------QLFAYVSLGEVQPSRPyyk-ql 117  Herbaspir...
CAS:CtCNB1_0691    29 iY--YGAka-----sLSeLGLYDiavVEPD-------------HGYDPqrLRDQApgSELYAYASVAEVLPERAyfk-kl 87   Comamonas...
Q1LFQ4             40 FH--YGArp-----pVDmLQAFDvavVEPD-------------SGFDP--RSARTpnTAWFAYVSVGEVLPSRAyfk-di 96   Cupriavid...
ACR31560           88 LY--YGAhp-----pVElLSAYDaavVEPD-------------SGFDP--LAHPLphTTWFAYASVGEVLPSRAyyp-ai 144  Burkholde...
jgi:Bphy_5290      52 LY--YGKtp-----pVEmLSAFDaavVEPD-------------SGFDP--LAHRLphTTWFAYASVGEVLPSRSyya-dl 108  Paraburkh...
WP_015868072       27 FAvyYGtg------nFEkLKNFDltiVAPGty---------sADQLDE--MVKAG--KYPVVYISVGELAPGDPayfsiN 87   Kosmotoga
WP_015852560       22 WAc-YYGSed----rTDeLSGFDllvADPGg-----------QDP-TP--LRAKG--VKVLTYISLGEVAAKGPyyeeaK 80   Maridesul...
Q2G7W2             34 WAvdYGAKtd----pALaRQ-FDllvLEPDh-----------ARPIEA--LRGPG--AKLLGYLSLGEVEQARPyvgrlR 93   Novosphin...
CBS88497           61 WAv-YYADaa----pLSaFQPYRllvLDSRt-----------HPPLQP--LADRG--KTLFGYLSVGEVETHRPwfgrvK 120  Azospiril...
6OJB_A            115 KDKF-----KDsdlghdlddWPGEKWLNIS-----SanvrqIMLDRLDMARDKGCDGVDPDNVDGYdndngldLTQADSI 184  Aspergill...
bbmufp:Hsero_4248 118 PPGLlrgdnAA---------WGSRV-IDQNapgwrDf----FLDKIIAPLWAQGWRGFFLDTLDSYql---faKTDAERA 180  Herbaspir...
CAS:CtCNB1_0691    88 PAAWqmarnGA---------WRSIV-IDQTpaqwpEf----FAQQVIAPLWEKGYRGFFLDTLDSYrl---aaHFDE--A 148  Comamonas...
Q1LFQ4             97 PQAWlsgsnDA---------WNARV-VDQAadgwpAf----YVDKVITPLWERGYRGFFLDTLDSYhl---vaKTDADRA 159  Cupriavid...
ACR31560          145 PKSWfagsnAT---------WASRV-IDQSqpqwpAf----FVDQVIRPLWEKGYRGFFLDTLDSYql---aaTTDEARA 207  Burkholde...
jgi:Bphy_5290     109 PKSWlagrnES---------WASRV-VDQSqpewpAf----FVEHVIKPLWDRGYRGFFLDTMDSWql---vaQTDDARA 171  Paraburkh...
WP_015868072       88 PKDLgtv----------neiWGSTR-VAASsra-----wrdIVIRRIRSQLERGFTGIFMDTVDSNp------------- 138  Kosmotoga
WP_015852560       81 HLNLlvrynEN---------W-DSWVVDVRrpewsEl----LFARIIPDALSSGYDGLFFDTLDSPidm--qrRDPDTYK 144  Maridesul...
Q2G7W2             94 KAGAliaanPN---------WPDARMVDLRhalwtSl----VVEEIIPAILAKGYDGIFFDTLDNAeam--qhADPVKMA 158  Novosphin...
CBS88497          121 GWGIldqenPN---------WPGSFYVDVRdrrwvKl----VVEELVPAILREGFHGVFLDTLDNPphl--erTEPKRWR 185  Azospiril...
6OJB_A            185 SFVNFLANAAHA------R-------NMSIGLKNAgdiipsviKNMQWSVNEQCAqynecd------------------- 232  Aspergill...
bbmufp:Hsero_4248 181 VQTQAMIATLREfkrrypEaklilnrGFELLPEIA--------PLTYAVAAESLYrgydagrrsygpvkd-ndrawlmgq 251  Herbaspir...
CAS:CtCNB1_0691   149 AQQDGLVRVIDTlhsrfpGiklilnrGFEIVPRVR--------DKIQMVAAESLYrgwdanlkryvevpa-kdrdwllqq 219  Comamonas...
Q1LFQ4            160 RQEAGMVRVLQAikarypDakllfnrGFEILPQVH--------SLAYGVVFESLFrgwnqaqgtytevsq-qdrdwllnq 230  Cupriavid...
ACR31560          208 RQQAGLVAVIRAirarypQaklilnrGFEIMPQVH--------DQIYAVAFESLYhgwnqaqrryvavpq-adrdwllgq 278  Burkholde...
jgi:Bphy_5290     172 RQMEGLANVIRAikahypDaklifnrGFEILPEVH--------DLVYAVAFESLYrgwdqtrqrytqvpe-qdrtwllaq 242  Paraburkh...
WP_015868072      139 DGVGAMADFIREirdtfpDmiiiqngAFDRLEKTG--------KYIDFVLWESFAttfnfntaryekafi---ddllikr 207  Kosmotoga
WP_015852560      145 GTERSCVALVRAirekfpKmllcqnrGFEIVRRTA--------PYINYLLIEGLSssmdletstrkdvseadrsflvgka 216  Maridesul...
Q2G7W2            159 GMVDAAAALVRAirarfpPitlmmnrGYALLPAVA--------PHVDVVLGEAMAskwdfakkayvrttpsdwewqaarl 230  Novosphin...
CBS88497          186 GMTDAAAALVRAirrnwpDigltqnrAYEILPQTA--------PLLTHVLGESVYagwdfaarrphrqsaedyrfqveal 257  Azospiril...
6OJB_A            233 tyavfPQNGKPVFHIEYpkgdktnndlsvTASQK---NAACD----FAGSANFSTVIKNM 285  Aspergillus fumigatus Af293
bbmufp:Hsero_4248 252 mqtareRYHLPVIAIDY------------VDPQQsgaRALARetaqKISADGFIPWVADG 299  Herbaspirillum seropedicae SmR1
CAS:CtCNB1_0691   220 lqtireRDKLPVLAIDY------------VAPHD---RDTTRataqRIAQLGIIAWVSDA 264  Comamonas thiooxydans
Q1LFQ4            231 arivreQYGLPVISIDY------------CPPTD---AQCRRdtarRIGALGITPYVTDS 275  Cupriavidus metallidurans CH34
ACR31560          279 artiraQYGLPVISIDY------------CAPGD---SACSRdaieRIRADGLVPFVTDG 323  Burkholderia glumae BGR1
jgi:Bphy_5290     243 aktireQYHLPVISIDY------------CAPAD---RACRQdtvaKIRAQDIVPYVTDG 287  Paraburkholderia phymatum STM815
WP_015868072      208 vqqlskkdGFGVLSLSY------------AAPED---KELRTfarnFARKCGFIPYVSTL 252  Kosmotoga
WP_015852560      217 nsalkANPKLVVLTLDY------------VPAGE---KLEISkaydFSRSLGFIPYVSTP 261  Maridesulfovibrio salexigens
Q2G7W2            231 reaklANPALRLTVLDY------------WDEAD---RDTVAalyhCEREAGFHPYVATL 275  Novosphingobium aromaticivora...
CBS88497          258 kaagaSNPRLGLLTLDY------------WDPAD---TAGVRaiydLQRANGFSPYVSTV 302  Azospirillum lipoferum 4B
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap