4E8U


Conserved Protein Domain Family
XS

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pfam03468: XS 
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XS domain
The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.
Statistics
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PSSM-Id: 397506
Aligned: 73 rows
Threshold Bit Score: 94.166
Threshold Setting Gi: 296090418
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4E8U_C             6 DEKLVYPWKGIVVNIPTTKaQDGRSAGESGSKLRDEYILrgFNPTRV-RPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK 84  thale cress
4_pfamImport       1 DKEILWPPMVIIMNTALAKdDNEKRIGMGNQELREYFSS--CTLINSvRHSYGPQGHRGISVLIFEATAMGCIQAQVLCE 78 
ERM93520         418 EDHIIWPPIVIIHNTNYGRrKDGRIEGMGNKEMDTKLKElgFGGGKS-KSMYGKEGHLGITVVKFMANQAGFKEAERLAE 496 Amborella t...
KQK23547         310 EDVIIWPPTVVIRNTATGRkKDGRYEGLGNKEMDKKIAElgFAGGKS-KSLYGKEGHLGLTLIKFANNPAGLKEAEHLAE 388 stiff brome
XP_006651060     203 EDLIIWPPTVIIRNTATGRkKDGRSEGLGNKEMDKKISElgFTGGKS-KSLYGKEGHLGLTLIKFANSPAGLKEAERLVD 281 malo sina
JCVI:AT3G22430.1 355 AQLIIWPPHVIVQNTSTGKgKEGRMEGFGNKTMDNRIRElgLTGGKS-KSLYGREGHLGITLFKFAGDDSGLRDAMRMAE 433 thale cress
CDY38319         328 DELILWPPHIIVHNTSTGKgKDGRMEGLGSKRMDDRIRElkFNVGKS-RALYGRDGHLGITLFKFAGDDSGLREALRIAE 406 rape
XP_009419208     393 EDLIIWPPTVIIHNTSSGRrKDGRIEGMGNREMDNILKElgFGGGKS-KSIYGKEGHTGITMVKFANTQAGMKEAERLAD 471 wild Malays...
EEF33325          85 EDLILWPPVVLIQNSSIANeNLDERMLVSIEGLKDILRGmgCDRGMT-NLCHGKAANRSTMVVIFSGTFSGLREAERLHK 163 castor bean
CBI40237         106 EDLILWPPLVIIHNISISNsDPEEWKLVTIEALGAFLRGkgFGGGKF-KMCLGKPADHSVMVVKFLGTFSGLEDAVKLHK 184 wine grape
4E8U_C            85 AYTVDGHGKKDW-----------LKKdgPKL----------G--LYGWIARADDYNG 118 thale cress
4_pfamImport      79 QFSVKGRDKDAWernpv--rfypGGIr----------------kLYGYMAEEKDMEN 117
ERM93520         497 FFEREGHGRRGWahvqslatpeeDDEknPNLvkgdektgekkrilygyvgtawdldk 553 Amborella trichopoda
KQK23547         389 FLERQDHGRIGWsraqa--thslDPDknPLLvetdn-rgekNriLYGYLATSSDlde 442 stiff brome
XP_006651060     282 FLERQDHGRMGWlraqp--rqslDSDnsPLLvetdnrtgekKriLYGYLAISSDmde 336 malo sina
JCVI:AT3G22430.1 434 YFEKINRGRKSWgrvqp-ltpskDDEknPGLvevdgrtgekkrifygylatvtdldk 489 thale cress
CDY38319         407 YFEKMNRGRKSWaglqp-ftpskDDEnnPSlmevdgktgekrrvlygylatvkdldk 462 rape
XP_009419208     472 YLEKDNHGRKGWarvqa--sqsgGDDknPTLvktdektgekKrvLYGYLATASDldk 526 wild Malaysian banana
EEF33325         164 LFGDKKHGRKDFqqisffgcktnCQEtqRVPvd------kvEnvLYGYMGIADDLDk 214 castor bean
CBI40237         185 YYAGNNHGRADLekinynngkssSSTeaGMQpdk-----peEvvLYGYMGIAEDldk 236 wine grape
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