Conserved Protein Domain Family
Smg4_UPF3

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pfam03467: Smg4_UPF3 (This model is not part of the current CDD release)
Smg-4/UPF3 family
This family contains proteins that are involved in nonsense mediated mRNA decay. A process that is triggered by premature stop codons in mRNA. The family includes Smg-4 and UPF3.
Statistics
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PSSM-Id: 515603
Aligned: 81 rows
Threshold Bit Score: 112.759
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_011386163 123 QFKSKVVIRRLPPNLPAHVFWKAVSpwirdsadcqaltttaqtssapaqpgaetseahtsdsrsaatssastSPTPTVDY 202
A0CWM3        11 pQSFKVHIRRLPPLLREEEFYATIQ-----------------------------------------------EYLNDIVM 43  Paramecium tetr...
XP_011271494  64 DAGFKVVVRLLPPNLKAEEFWSKVEd---------------------------------------------yVTAQNILD 98 
XP_001382558  43 ySNVKVVLRLLPPTLDENGFYDQLSaf-------------------------------------------ydVNSPNITS 79 
XP_003688059  63 VSGFKLVLQSLPPALTETEFWDAVKsvvn----------------------------------------dtnEYQINLNS 102
Q756Q0       115 DVGHKLVVRLLPPNLTEDEFYRTLCphlp----------------------------------------seqFFEKTTRD 154 Eremothecium go...
XP_002552589  62 SAQYKLVLRQLPPNLMEEQFFDTVSaav-----------------------------------------gsdFLQQHVED 100
XP_003681278  62 DVGVKLVLRLLPPDLSQDQFLETIKpev------------------------------------------geFSDCGVLE 99 
P48412        83 NEGFKLVIRLLPPNLTADEFFAILRdnnndd-----------------------------------gdkqdiQGKLKYSD 127 Saccharomyces c...
XP_022466709 111 SEGFRVVMRLLPPNLTFEELCTTLKteit----------------------------------------sdfVSVYRISD 150
XP_011386163 203 KQFVAGKlktDTNKQNKHARAYVRFLDAQMLVQFYKAFDGHIFRD-SRGNESIAIVEFAPYQKVvvsTPrtgtrggpraA 281
A0CWM3        44 KYYVKGK---LKEQEKIDSRCYLFFNCDAAMSRFIQGYKK-VFCD-EKGIYYQPDIGKALLQNQqdhLR----------N 108 Paramecium tetr...
XP_011271494  99 KYYVQGKysnKPFKLPTYSRAYIQFEDPQIVDQFVAKYKEVTFEDdKE--SMIPTFAMALFSKMpenEKsp-------sK 169
XP_001382558  80 KYYVKGSypaKPFEAPIYSRAYITFHTSDDVVFFMSSVNGKPFVEpETEDSFTPLVERAIFNKMpakDGk---------E 150
XP_003688059 103 FYFVQGKlsdKPFHDPVYSRSYIMFKDMENLRKFALKIQDVTFTD-ANNDSSVASIKISPYNRSynsALekk----kpaA 177
Q756Q0       155 RYYVPGHysrKPFKLPTYSRCYLIFYDLAALQTVGRILQNMTFVD-DHDNATVPKLFLSPYVKKmrnLGghm----qiqD 229 Eremothecium go...
XP_002552589 101 RYFFKGHfsrKPFKLPTYSRAYMTFNEAEKLQFFAKSVSAVTFVD-DTNNSMVPTVTLSPYLKKlrtEEskg-----lrK 174
XP_003681278 100 WYYVRGHypqKLSTRPVYSRCYLIFESTESLAEFTKKVQPIKFVD-DKDNATNVVTRVSTYVKRfvpNTvd------psP 172
P48412       128 WCFFEGHyssKVFKNSTYSRCNFLFDNLSDLEKCANFIKTCKFID-NKDNITIPDMKLSPYVKKftqTS----------K 196 Saccharomyces c...
XP_022466709 151 IYYVQGHysvKAFNEPIFSRCYFHFDDMENLKAFVMKLQGIMLVD-DRDNAVKPTIKLTPYAKKlsdTNpng----fgkS 225
XP_011386163 282 KLDAQQGTIDKDAD-YQCFLERLSKADDQvqr-seGELLASLLDSKGKek--------------------etEARRLAGK 339
A0CWM3       109 KPKPLEGEYQKTEL-YKRFLKFLEEEQLQqqemenAQTQQLKEEPINPe----------------------dKPKKFEKV 165 Paramecium tetr...
XP_011271494 170 KPDSKPKHTLQDLLsYKNFLKFYNGEIERpqsfliSEKNDKRAEKRA-------------------------AKKAEKKA 224
XP_001382558 151 ESITEKSSVEGSEL-FQEFVKFLNGETKEynivqlVKLNKRRAREKLKn-----------------------ERKKEKKA 206
XP_003688059 178 NKKVLEGTIKDDPL-FKAFVQSMK-------------------IMAESdqymyseinlfkplkkeldkqkqvNEAILKQT 237
Q756Q0       230 QKLKLEGTLDKDPI-FQIFTKSLQ------------------LLEENKgeyqykdlhilnplekelkkrrevDGSIKKQV 290 Eremothecium go...
XP_002552589 175 TKDLIEGTIEQDRT-FQTFLKSLD------------------LLENHKqeyqyadlsvimplekalrrkleeEARVKAQG 235
XP_003681278 173 VSAALEGTITEDPL-FLTFMKSLK------------------ILEEKKsdysfadvsilkplekevakqkavESEIQRKT 233
P48412       197 KDAALVGTIEEDEI-FKTFMNSMK-------------------QLNENdeysfqdfsvlkslekefsksielENKIAERT 256 Saccharomyces c...
XP_022466709 226 KTFVLEGSLEETKL-FKNFMKSLKy----------IEKTQEAGDEGSLfnlldgsisllkplekelakkkkaEAAVKRKT 294
XP_011386163 340 VTPLLL------HLREQ 350
A0CWM3       166 KTHIIM------ELEKE 176 Paramecium tetraurelia
XP_011271494 225 EKKVEK--------KNE 233
XP_001382558 207 AKAAEA------KIAKL 217
XP_003688059 238 EKALVEla---gAVESE 251
Q756Q0       291 HDAMIElageiesedkk 307 Eremothecium gossypii
XP_002552589 236 EKAMIAlagqvakettk 252
XP_003681278 234 ENALIAlt-----gDSG 245
P48412       257 ERVLTElvgtgdKVKNK 273 Saccharomyces cerevisiae S288C
XP_022466709 295 ENALTEla---gSIAGN 308
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