4EQ4,5ECQ


Conserved Protein Domain Family
GH3

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pfam03321: GH3 
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GH3 auxin-responsive promoter
Statistics
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PSSM-Id: 397418
Aligned: 158 rows
Threshold Bit Score: 292.568
Threshold Setting Gi: 81377009
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4EQ4_B            20 QLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFl----IDRfDKe-----lFKKNVPIVSYEDIKPYLDRVVNGesSD-V 89  thale cress
WP_013627971      28 RFEKTMNRAADQQQQWLLKRIRKCEETQFGIDHgfs-niHTvAD-------FQRQIPVSDYTYFAPYIDEVAAG--NTqA 97  Rubinisphae...
Q7UIB5            23 rYLADAERARDIQRENLLHRIHQNADTAFGRDHgfs-eiRTlED-------FRRRVPIAGYEAARPYVDRVIQG--ETtA 92  Pirellula sp.
jgi:Sinac_6215    23 qFLSQTSCADEVQRDLLMSRIARHADSQFGRDHhfh-eiRTpAD-------FRRRVPIRGYDAMEPYIDRVRQG--DLgA 92  Singulispha...
WP_013563397      22 rFLDDTKRADQVQRRVLARLLERDAASDFARRHglt-taRDlET-------YRRRVPIRDYDGHEPDFARVRQG--DLtA 91  Isosphaera ...
WP_012806395      38 sniksKSKIRKTQVKILLEILKTNKNTEYLKNFetesqILNaENekeliekFQNKIPIVNYEDIKEFVEKEKSG--ENnV 115 Leptotrichi...
jgi:Riv7116_5955  18 KFYQALENPQIAQQKVQNEIFKSLMKSDYGRYLrvk----siDD--------WHKIPIVEYQNIENWIHTQQQD--KThL 83  Rivularia s...
CCU73758          26 kMLESSKQLESIQRAKLQATLTLVAGSASGKQHnvs-adMSlEE-------FQQRIPVTDYDHWHDMIVEQQKS--NSpM 95  Thalassolit...
Q6F6L5            26 RFQKQKNALQQVQREKLQQILKISTLAQAAg-------VTDyEQ-------FRQQFPVTRYTHWRDRIHECRA---QQsT 88  Acinetobact...
WP_014356969      38 SFYFMENNPEYTQKSVLQDILKSAENSEFGQKMgfs-eiSTiER-------FKEKLPISNYSDLEAEIEKLKAG--KKdV 107 Acetobacter...
4EQ4_B            90 I--SARTITGFLLSSGTSgGAQKXXPWNNK------YLDN-LTFI-YDLRXQVI---------TKHVkgvEEGKGXXFLF 150 thale cress
WP_013627971      98 LvpATEKLLRFTITTGSS-GAPKLNPVTDT------WLKE-YKq--AWGIWGLknf----vdhPRHVg----LKMLQMAG 159 Rubinisphae...
Q7UIB5            93 LfpENTKVVMFATTSGTT-DHPKMIPVTED------FYRQ-YKa--GWQYWGTgvy----rdyPHLLq----MKSLQFSS 154 Pirellula sp.
jgi:Sinac_6215    93 LfgSGTKVLMFAMTSGTT-NRPKTIPVTQE------SLAD-YRe--GWTIWGIlaf----dahPRILs-rGLLPILQIAS 157 Singulispha...
WP_013563397      92 LfgPGVEVLMFAKTSGTT-AIPKTIPVTRE------SLDA-YRa--GWKIWGIqaf----dahPDMLs-qGLKPILQIAG 156 Isosphaera ...
WP_012806395     116 L--LSDKIKLFELTSGST-SNVKYIPYTEK------FLKS-YMNGvFAWIYNLYqnnkrlflgSSYW-------SVSPIL 178 Leptotrichi...
jgi:Riv7116_5955  84 L--SSERVIFYEKTSGSS-GAAKSIPYTKS------LRHS-FNKMfCVWAHDLIkngpnfttgKIYF-------CISPQL 146 Rivularia s...
CCU73758          96 L--TSEGCERYQPTSGST-SKIKWIPYTQA------FLNE-LDGAiSPWMSDLYssfpgikkgRHYW------------- 152 Thalassolit...
Q6F6L5            89 L--SNSKLVRYQPTSGSS-EQIKFIPYTQA------FLDE-LDAAiAPWLSSMYrkcstlgqgTHYW------------- 145 Acinetobact...
WP_014356969     108 L--FNGATASFIATSGST-GVPKLIPESKNgeiikgLVSQiRAILlLMLAPEVMe---------------pQKKILAIAN 169 Acetobacter...
4EQ4_B           151 TKQESX-TPSGLPAR--VA-TSSYFKSDYF-KNRPsnw--yysYTSPD--EVI--LCPNNTESLYCHLLCGLVQRDEVVR 219 thale cress
WP_013627971     160 TWEMGK-TTGGYSIS--MV-SALLARIQNPlLRPF--------YAIPS--ELN--DVKDPVSRYYAALRLSI-LEP-IGW 221 Rubinisphae...
Q7UIB5           155 HWNVTQ-TPSGAPCG--NI-SGLAAETRPFyIGSL--------FVLPA--CVI--QITEHLAKHYTALRLSL-ACDRVGK 217 Pirellula sp.
jgi:Sinac_6215   158 DWRESV-TPSGIPCG--AI-TGLTAHMQNPlIRLT--------YCMPA--IAS--RIKDIESKYYVALRLSV-FRN-LGT 219 Singulispha...
WP_013563397     157 DWRESF-TPSGLPCG--AI-TGLTARMQSPlVRLA--------YCLHP--SVG--RVKDVDTKYYLALRSAL-PRD-LGT 218 Isosphaera ...
WP_012806395     179 KREAV--TSGGIRVGieDD-TSYFDKVSAFfLNKL--------FTVPK--KIK--SIQNMEDFLLITAVFLL-LSENLAM 242 Leptotrichi...
jgi:Riv7116_5955 147 GEEKVElEKSSLS-------QSQSLQDDSDyLDGWlkflignfLVSPPglNKL-----NDVEKFKHQLAKTLLKSDKLEI 214 Rivularia s...
CCU73758         153 -------SLSWVPSDlrNQ-VSESINDDLKlLPWWkrifmartMAVP---EAV--SLAESSEESFFATSCYLASCTDLSF 219 Thalassolit...
Q6F6L5           146 -------SVSWLPESqrEVlKNENLNDDSAlLGVGkrllskftQTVP---SDV--SFAAHADDALFATLCYLVADQDLAM 213 Acinetobact...
WP_014356969     170 PSEYGK-TVGGIPIG--SA-SGQAAKDLPAeLKKK--------MVLPV--EMMlaKDLGNEATDYLTIRYALEEKQLVGV 235 Acetobacter...
4EQ4_B           220 TGSIFAS--VXVRAIEVLKNSWEELCSNIRSGHL-S-NWV---TDLGCQNSVSL-VLg-gP--------RP-----ELAD 277 thale cress
WP_013627971     222 IILMNPG--TLIRLAEIGDENKEQLIRDIHDGGL-S-DHMd--VPQEIRTKLAKrLSv--A--------NP-----AGAR 280 Rubinisphae...
Q7UIB5           218 IVTANPS--TLVEVAKFADTMKETLIRDIHDGTL-T-Gdq--pIPDAIRQQLRSrLr---P--------NP-----RRAR 275 Pirellula sp.
jgi:Sinac_6215   220 TIAANPS--TILAIARLGDREKATLIRDLADGTI-D-PKWd--LPVEVREALRRkVGr--K--------HK-----QAAR 278 Singulispha...
WP_013563397     219 IIAANPA--TVLGIVKLAERDAATLLRDLYDGTV-A-PRFreaIPPETQRALSWsLSr--K--------HR-----GLVR 279 Isosphaera ...
WP_012806395     243 ISVWSPS--FLMILLDFIEKNHKVICQIVKSEDLgT-EFF--------------------A--------DKnlgnkKYFQ 291 Leptotrichi...
jgi:Riv7116_5955 215 ISIWSPT--FLKVILDYIQQHRKQLALELKNVMS-----------------ARRrLMllqPhlfkqvsaNP-----KLNE 270 Rivularia s...
CCU73758         220 ISVWSPT--FAMSILQLMQEHRAAIAEVLRTGEWvEpFKTltyLEAPKNLEAAKiMAawdG---------------EISP 282 Thalassolit...
Q6F6L5           214 ISVWSPT--FALQLLEKLTEQSHEIALVLETGQW------------QTRAASLKgVKa--Pyn------------sARAS 265 Acinetobact...
WP_014356969     236 VCSNIAHfnILLKKMKTF---AGDLLDDIENGQI-S-SKIa--ISETLREQLTAkLR---P--------NP-----QRAN 292 Acetobacter...
4EQ4_B           278 TIEEICnq--------------nsW-KGIVKR------------------------------------------LWPNTK 300 thale cress
WP_013627971     281 KLEEIVnr---------------sGr-LLPRD------------------------------------------YWPN-P 301 Rubinisphae...
Q7UIB5           276 QLQQIVdr---------------tGh-LYPKD------------------------------------------AWPDLT 297 Pirellula sp.
jgi:Sinac_6215   279 RLEAIVnq---------------tGr-LLPKD------------------------------------------YWPDLC 300 Singulispha...
WP_013563397     280 RLESLLer---------------hGr-LRPID------------------------------------------YWPHLQ 301 Isosphaera ...
WP_012806395     292 IIQKKYrklwkknrskflinyfneHeKNILSKndktqnleitkknneneiiaenknletksgnkivenfvdysvIWKKLS 371 Leptotrichi...
jgi:Riv7116_5955 271 LLQRINsnki------------------------------------------------------------pwhlLWSELK 290 Rivularia s...
CCU73758         283 KITKA---------------------------------------------------------------------LWPNLA 293 Thalassolit...
Q6F6L5           266 LLRQLMkkdtl-----------------------------------------------------------dyqqLWPKLS 286 Acinetobact...
WP_014356969     293 ELRVIYd----------------tHkQLDVAS------------------------------------------IWPEFS 314 Acetobacter...
4EQ4_B           301 YIETVVTGSXGQYVPXL-NYYCND-----LPLVSTTYGSSETTFGINL---DPLCKPEDVSYTFXPNXSYFEFIPXDGG- 370 thale cress
WP_013627971     302 VIACWLGGTAGYQSRYV-RDYFGD-----SPLRDMGLVSSEGRHTIPI---ADDVPE----GVPSLVSGFYEYVPVHEIe 368 Rubinisphae...
Q7UIB5           298 LLAVWTGGSVGLYLNQL-PEYYGD-----AAIRDHGLSASEGRMTVPL---QNGSPS----GMLDYSSHHFEFIPESERd 364 Pirellula sp.
jgi:Sinac_6215   301 FLANWTGGTMGAYLRNY-PEYFGD-----RPVRDVGLIASEGRMTIPI---EDGTPA----GVLDIRHHYFEFIPEDQAn 367 Singulispha...
WP_013563397     302 FLANWTGGTMGAYLRDY-PDWFGP-----KPVRDVGLIASEGRMTIPI---EDHTAA----GILDFIHHHFEFLPEETVe 368 Isosphaera ...
WP_012806395     372 LVSCWADSDSYEIFIKLkEKLNFDkkninLKFQGKGLMSTECIVSFPL---ENVQNGSVAAYT----SFFYEFIQVSDDk 444 Leptotrichi...
jgi:Riv7116_5955 291 LISCWDSTNAADGADFL-RSLFPN-----VLVQGKGLLATEAPMTIPL--------IPAKGCVPLLNEVFFEFLDESGF- 355 Rivularia s...
CCU73758         294 LISSWDTSSSKGWAEKL-HAIFPH-----SGFQGKGLWATEGVVTFPI----------GDKYPLSLNSHFYEFEDLETQe 357 Thalassolit...
Q6F6L5           287 LVSSWDTAGSKQWAQLL-QSELPF-----AQFEGKGLWATEGVVTIPY----------DDLYPLAYHSHFYEFEYLAGEh 350 Acinetobact...
WP_014356969     315 VISCWMSASAANIVTDI-KKNLPNh----VKFLEWGYGASEGKFNIPDragNPAGLPALFGY-------FFEFLPVDANn 382 Acetobacter...
4EQ4_B           371 --------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENvVLSIDSDKTNEEDLFK 442 thale cress
WP_013627971     369 s-------pdPTVLQGHELLEGQEYYLLMTTSAGYYRFNIGDIVRCNGFVGQAPLLEFTQKGTrVGDLEGEKVTERQILE 441 Rubinisphae...
Q7UIB5           365 s-------ktPHVLEAWELTEGENYFIVLTTASGLYRYDIHDLVRCDGFCGQTPMLSFLNKGKnFCSFTGEKLSEHQVMQ 437 Pirellula sp.
jgi:Sinac_6215   368 h-------eaPETVEAHELIEGQRYFILPTTAGGLYRYQIHDLIRCVGFHGKAPVIEFLNKGAhFSSLTGEKLSEFQVVA 440 Singulispha...
WP_013563397     369 ragtvhdlAQADTLEAHELVEGRRYFLLMTTAGGLRRYHIQDVVRCVGFVGKAPLLEFLNKGAhVSSLTGEKLSEFQVVA 448 Isosphaera ...
WP_012806395     445 l-------enRSPKLLDELELGERYCVVVTTNAGLYRYNTNDIVEVAGFYHKIPIVKFVGRINnFSDIVGEKLKNSFVEK 517 Leptotrichi...
jgi:Riv7116_5955 356 ------------VYQLHQLKQGNTYEVIISQKGGFYRYRIGDRVRFTHSYLNTPCLEFVGRKKeVSDLVGEKLHSEFVRD 423 Rivularia s...
CCU73758         358 ------------iLTAWQLKEGQRVRPILTTGNGLLRYATKDQLLVTGFINQCPCLQFISRIDg-VDMVGEKLAPDVAVN 424 Thalassolit...
Q6F6L5           351 ---------qGDIIPSWQLKLNDLVSPVLTSGNGLLRYCLDDCLRVTGFYGQVPCFEFQGRRFg-VDLVGEKLSPEVAHK 420 Acinetobact...
WP_014356969     383 ----------QETLLAHELEPGAYYELIVTSYSGLYRYNMKDIVYVTDMNNQIPRIVFVSKSSeSLVVDELKLMVYEIDR 452 Acetobacter...
4EQ4_B           443 AVS-QAKlVleSSgLDLKDFTSYA-DTS-----------TFPGHYVVYLEVDtkegEeketaqfeldeealSTC-CLVXE 508 thale cress
WP_013627971     442 AAHeAAReL---G-LPLGLFTG-VpRRLe----------REAPRYDFLVETAd--lPdae---------tarRF-LHTFD 494 Rubinisphae...
Q7UIB5           438 AMQqTLQsI---N-APSCTFTL-Ap--Tl----------GERPRYHLVLDDSslpn-------------lceRI-GQELQ 486 Pirellula sp.
jgi:Sinac_6215   441 AVGaAQRtL---N-LRLSSFLL-Lp--Sw----------GDPPHYNLLVEESd--lVdrn---------tveKL-AAEVE 491 Singulispha...
WP_013563397     449 AVDqTRReF---N-ARWMTYLV-Lp--Vw----------GDPPGYRLLIEADdlagAdse---------yldRL-ARAID 501 Isosphaera ...
WP_012806395     518 QVLtTLEeNniKG-----EFLLFApVKNe----------TGGIFYTLFLEIKkdgrKfn-----------wKQI-EKEIN 570 Leptotrichi...
jgi:Riv7116_5955 424 VLEtLP--------LEESCFKSLVpVKH------------PQEHYILLLDNAeh---------------npEEI-AMQLE 467 Rivularia s...
CCU73758         425 LINeFDGk------HGIAPVTLLAlPSNef---------rAKPTYALLCSGDdkakAh------------gAEL-SAQLE 476 Thalassolit...
Q6F6L5           421 LLTrLNQq-------HIQAISLFAvDTQq----------QAKPFYAVLVEGEa-----------------tSPLsVDEID 466 Acinetobact...
WP_014356969     453 HIKkISDdL-----AEEIRFFQVLlDENekklifilepcSETFNY--------------------------KSF-RETLE 500 Acetobacter...
4EQ4_B           509 ESL--DNV-YKRCRfKDgSIGPLEIRVVRQ-----GTFDSLXDFFI-S--QGASTGQYKTPRCIKSGK 565 thale cress
WP_013627971     495 QELakLNFlWRARR-KEgVLAPPHLWRLQA-----GRWEQYISAEVaR--VGTGDYQYKHPGIVLKeq 554 Rubinisphaera brasiliensis
Q7UIB5           487 NQLaqVNCeYADKC-ASgRIEPIQVTRVPA-----GTWEKLRASKTsK---RGNFEEYKHPCLTNDPN 545 Pirellula sp.
jgi:Sinac_6215   492 AELqrLNLeYENKR-STlRLGPIRIRRIPA-----GSWSDFQKRRLaR--SGGTVEQYKQPHLMPDlg 551 Singulisphaera acidiphi...
WP_013563397     502 HKLrhLNEeYANRL-DTrRLAPLKIELIAS-----GSWTALQRRRLeR---GGTLEQYKKPCLLPdld 560 Isosphaera pallida
WP_012806395     571 SSLc-KAFhYEYAY-KLgQLRKVRVFLIEK-----NGLKTYTAEKS----KKQKIGDIKYRLLdknfg 627 Leptotrichia buccalis
jgi:Riv7116_5955 468 EGLq-KSHhYRRAR-LLeQLETARVMISPKipeiiSLYKSK---------SGKKWGDLKHDILANQpi 524 Rivularia sp. PCC 7116
CCU73758         477 NSLc-QHFhYKLAR-ELgQLAKAELLIVDD-----AM----DVYTShKiaGGMVAGNIKVEPLVlwqs 533 Thalassolituus oleivora...
Q6F6L5           467 QALr-EHFhYELAR-DLgQLDQPQIFYVDN-----GW----EGYKQvVvrEGMIEGNIKPEPLKkvtl 523 Acinetobacter baylyi
WP_014356969     501 TSLttENQvYQKLR-QSrQLLPAEVIAVID-----GYRDSLFTRSIm---PGKNVNQTKLKTIVReyp 559 Acetobacterium woodii
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