Conserved Protein Domain Family
LOB

?
pfam03195: LOB (This model is not part of the current CDD release)
Lateral organ boundaries (LOB) domain
The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.
Statistics
?
PSSM-Id: 515444
Aligned: 133 rows
Threshold Bit Score: 107.203
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_052145269  38 PCGACKFLRRRCVPGCVFAPHF-----SGcggsgvgagvggrgreRGAAEFAAVHRVFGASNVAKLLSRV-PAALRRDAA 111
CAG1845753     2 SCNGCRVLRKGCSRACVLRPCLrwidtAE----------------AQGHATAFVARFFGRAAFMSLLSAVp-DSQRPALF 64 
CAG1844715     2 SCNGCRVLRRGCSATCILRPCIqcidgAG----------------AQAHATAFVAKFFGRSTLLSFLSSVp-LPRRPAAF 64 
XP_044378467   4 SCNGCRVLRKGCADDCTIRPCLawirsPD----------------AQANATVFLAKFYGRAGLINLLAAApDDAHRPALF 67 
NP_001340931   4 SCNGCRVLRRGCTTECPIRISLqwinsPN----------------SQSNATLFLAKFYGRQGLLTLLTNAp-SQLQQAVL 66 
7_pfamImport   1 SCNGCRVLRKACSQDCIIKPCLewiknPD----------------FQANATLFLAKFYGRAGLINLINAGp-QQLRPAIF 63 
NP_001340934   4 SCNGCRILRKGCGEDCAIRPCLewintPQ----------------AQANATLFLAKFYGRAGLVNLIDSAp-QHNGPAVF 66 
XP_003555233   4 SCNGCRILRKGCNDNCIIRPCLewmnsPE----------------SQANATLFLAKFYGRTGLLNLITAAp-QHLGPVVF 66 
XP_006341223   9 KCAPCKYQNNICDENCPLAPFF-----PS----------------NKVDEFDKVIRLYSIDTLINMLNSVtANEKKAKMA 67 
EFH51672       5 PCRFCRLQNKQCVNDCMFSPLF-----PS----------------NNLRKFTIMNFVFGHKTLTFFLKDL-SPMDRKYTT 62 
XP_052145269 112 RTVCYEAQARIADPVYGSVGTILALQHQVSLLQGQLSVLES 152
CAG1845753    65 QSLLFEACGRTINPVGGAVGLLCTGNWHLCQAAVNAVLNgd 105
CAG1844715    65 RSLLYEACGRTINPVTGATGLLWTGNWHLCQAAVATvlggg 105
XP_044378467  68 RSLLYEACGRAANPVYGASGLFSTGNWEACQAAVQAVLEGr 108
NP_001340931  67 KSLLYEACGRIVNPVLGSTGLLSTGNWHLCEAAVKAVLNGA 107
7_pfamImport  64 RSLLWEACGRVVNPIYGSVGLLWSGDWNRCLDAVDAVL--- 101
NP_001340934  67 KSLLYEACGRIANPTFGSVGLFWTGEWAQCQAAVDAVLAGS 107
XP_003555233  67 RSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAAVDAVLTGS 107
XP_006341223  68 ETLILEAKIRYENPVYGSLAVIEKLNLEIEETQKELDLVQK 108
EFH51672      63 RTLYFEAKSWFFGPSKDPSDFLNAVINYANQTLAELSKTKK 103
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap